Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18489 Sapria himalayana HOM05D001982 ORTHO05D003938 1.8e-57 225.7 114 100.0
CDE04G3537 Ceratophyllum demersum HOM05D001982 ORTHO05D003938 5.4e-14 81.3 90 51.1
HPP92_020368 Vanilla planifolia HOM05D001982 ORTHO05D003938 6.0e-13 77.8 101 45.5
CAN.G282.53 Capsicum annuum HOM05D001982 ORTHO05D003938 2.4e-09 65.9 128 35.2
Nn1g09877 Nelumbo nucifera HOM05D001982 ORTHO05D003938 5.3e-09 64.7 135 34.1
Atru.chr9.96 Acer truncatum HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Actinidia38418 Actinidia chinensis HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
ATR0618G140 Amborella trichopoda HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Cfa017838 Carpinus fangiana HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
CiPaw.16G072900 Carya illinoinensis HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
ClCG01G014830 Citrullus lanatus HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Haze_18370 Corylus avellana HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
MELO3C002167.2 Cucumis melo HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
CsaV3_1G007500 Cucumis sativus L. HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
MBI06_g20297_MAGBIO Magnolia biondii HOM05D001982 ORTHO05D003938 5.8e-08 61.2 146 31.5
MD06G1239800 Malus domestica HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
MD14G1245700 Malus domestica HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Potri.012G036200 Populus trichocarpa HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Potri.015G028200 Populus trichocarpa HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Prupe.5G243700 Prunus persica HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Sabra12G0024700 Salix brachista HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Sed0001556 Sechium edule HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Sed0019851 Sechium edule HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
TWI15G0763 Tripterygium wilfordii HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
TWI81G0371 Tripterygium wilfordii HOM05D001982 ORTHO05D003938 5.8e-08 61.2 147 32.0
Duzib052G0243 Durio zibethinus HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Gohir.A03G165300 Gossypium hirsutum HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Gohir.A13G060800 Gossypium hirsutum HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Gohir.D02G188500 Gossypium hirsutum HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Gohir.D13G060900 Gossypium hirsutum HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Oeu030729.1 Olea europaea HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
PGR083G2378 Punica granatum HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
Thecc.02G158000 Theobroma cacao HOM05D001982 ORTHO05D003938 7.6e-08 60.8 147 31.3
arahy.Tifrunner.gnm1.ann1.XQH9IF Arachis hypogaea HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
arahy.Tifrunner.gnm1.ann1.YRK7KB Arachis hypogaea HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
CANSAT64G2347 Cannabis sativa HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Cpa.g.sc0.123 Carica papaya HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Cc11_g03450 Coffea canephora HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Glyma.09G164900 Glycine max HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Glyma.16G213200 Glycine max HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Manes.04G053480 Manihot esculenta HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Manes.11G102600 Manihot esculenta HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Os07g0577700 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Phvul.004G139300 Phaseolus vulgaris HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Psat1g121920 Pisum sativum HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
SEGI_18150 Sequoiadendron giganteum HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
PGSC0003DMG400016412 Solanum tuberosum HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
VMungo0464G0532 Vigna mungo HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
Zm00001eb325420 Zea mays HOM05D001982 ORTHO05D003938 9.9e-08 60.5 147 31.3
CSS0026731 Camellia sinensis var. sinensis HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
CAN.G39.9 Capsicum annuum HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 30.6
Dinv11727 Davidia involucrata HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
Eucgr.H00643 Eucalyptus grandis HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 30.6
Lj3A848T56 Lonicera japonica HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
Nitab4.5_0000069g0360 Nicotiana tabacum HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 30.6
Peaxi162Scf00334g00321 Petunia axillaris HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 30.6
RcHm_v2.0_Chr7g0177081 Rosa chinensis HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
TPR.G19874 Trifolium pratense HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
TAR371G1187 Trochodendron aralioides HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
TAR629G0467 Trochodendron aralioides HOM05D001982 ORTHO05D003938 1.3e-07 60.1 147 31.3
Actinidia13716 Actinidia chinensis HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 31.3
arahy.Tifrunner.gnm1.ann1.X8LG8D Arachis hypogaea HOM05D001982 ORTHO05D003938 1.7e-07 59.7 149 30.9
Hma1.2p1_0989F.1_g244810 Hydrangea macrophylla HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 30.6
Lalb_Chr22g0353971 Lupinus albus HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 31.3
Nitab4.5_0004301g0040 Nicotiana tabacum HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 30.6
Potri.005G091400 Populus trichocarpa HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 30.6
QL10p034220 Quercus lobata HOM05D001982 ORTHO05D003938 1.7e-07 59.7 147 31.3
Aa31LG11G2700 Aethionema arabicum HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
MSTRG.298 Avicennia marina HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
MSTRG.8248 Avicennia marina HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
Ciclev10020931m.g Citrus clementina HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
Ciclev10032075m.g Citrus clementina HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 30.6
Eucgr.J00864 Eucalyptus grandis HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 30.6
MBI03_g13817_MAGBIO Magnolia biondii HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
SGA_v2.0_scaffold221G42671 Striga asiatica HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
THA.LOC104819374 Tarenaya hassleriana HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 31.3
GSVIVG01026227001 Vitis vinifera HOM05D001982 ORTHO05D003938 2.2e-07 59.3 153 29.4
Zm00001eb107590 Zea mays HOM05D001982 ORTHO05D003938 2.2e-07 59.3 147 30.6
Ca_11833_v3 Cicer arietinum L. HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 30.6
Duzib248G1602 Durio zibethinus HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 29.9
ECA246G4989 Erigeron canadensis HOM05D001982 ORTHO05D007237 2.9e-07 58.9 147 30.6
FAN04G2680 Fragaria x ananassa HOM05D001982 ORTHO05D008035 2.9e-07 58.9 147 30.6
FAN08G1981 Fragaria x ananassa HOM05D001982 ORTHO05D008035 2.9e-07 58.9 147 30.6
FAN13G2347 Fragaria x ananassa HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 30.6
Gorai.013G069200 Gossypium raimondii HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 30.6
Nitab4.5_0000661g0020 Nicotiana tabacum HOM05D001982 ORTHO05D003938 2.9e-07 58.9 140 30.7
PSO063G1706 Papaver somniferum HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 30.6
PSO782G3517 Papaver somniferum HOM05D001982 ORTHO05D003938 2.9e-07 58.9 147 30.6
Dinv17623 Davidia involucrata HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Migut.N00791 Erythranthe guttata HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Lsat_1_v5_gn_3_36280 Lactuca sativa HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Medtr6g077820 Medicago truncatula HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Peaxi162Scf00021g01916 Petunia axillaris HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Hund08610 Selenicereus undatus HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Solyc01g007910.3 Solanum lycopersicum HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Sopen01g003450 Solanum pennellii HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 30.6
Sopen02g001820 Solanum pennellii HOM05D001982 ORTHO05D003938 3.8e-07 58.5 147 29.9
Lalb_Chr14g0370241 Lupinus albus HOM05D001982 ORTHO05D003938 4.9e-07 58.2 147 29.9
Oeu011121.2 Olea europaea HOM05D001982 ORTHO05D003938 4.9e-07 58.2 147 30.6
Sabra05G0075300 Salix brachista HOM05D001982 ORTHO05D003938 4.9e-07 58.2 147 29.9
SGA_v2.0_scaffold2G01008 Striga asiatica HOM05D001982 ORTHO05D003938 4.9e-07 58.2 147 30.6
CARHR190290 Cardamine hirsuta HOM05D001982 ORTHO05D003938 6.4e-07 57.8 147 30.6
COL.COLO4_33052 Corchorus olitorius HOM05D001982 ORTHO05D003938 6.4e-07 57.8 147 30.6
Gorai.005G211200 Gossypium raimondii HOM05D001982 ORTHO05D003938 6.4e-07 57.8 147 30.6
Hund24379 Selenicereus undatus HOM05D001982 ORTHO05D003938 6.4e-07 57.8 147 30.6
unitig_747.g21790 Utricularia gibba HOM05D001982 ORTHO05D003938 6.4e-07 57.8 147 30.6
Aa31LG3G18270 Aethionema arabicum HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
AL6G34470 Arabidopsis lyrata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
AT5G23250 Arabidopsis thaliana HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BcaB01g05616 Brassica carinata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BcaB08g37266 Brassica carinata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BcaC03g13215 Brassica carinata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BcaNung05098 Brassica carinata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
A03p03740 Brassica napus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
A10p28380 Brassica napus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
C02p03480 Brassica napus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
C03p04220 Brassica napus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
C09p68640 Brassica napus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BolC2t06309H Brassica oleracea HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BolC3t12954H Brassica oleracea HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BraA02t04948Z Brassica rapa HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BraA03t09721Z Brassica rapa HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
BraA10t44885Z Brassica rapa HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Carub.0006s0718 Capsella rubella HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Carub.0006s2102 Capsella rubella HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
DCAR_026892 Daucus carota HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Duzib132G0765 Durio zibethinus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 31.3
Migut.F00794 Erythranthe guttata HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 29.9
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Thhalv10004347m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Thhalv10013993m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
FvH4_5g18391 Fragaria vesca HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 29.9
FAN18G1706 Fragaria x ananassa HOM05D001982 ORTHO05D008035 8.4e-07 57.4 147 29.9
HanXRQChr06g0170891 Helianthus annuus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
HanXRQChr17g0540971 Helianthus annuus HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Sp2g23900 Schrenkiella parvula HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Sp6g34660 Schrenkiella parvula HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
Sc06g0006770 Simmondsia chinensis HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 29.9
THA.LOC104818374 Tarenaya hassleriana HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 30.6
GSVIVG01029337001 Vitis vinifera HOM05D001982 ORTHO05D003938 8.4e-07 57.4 147 31.3
Solyc02g005350.3 Solanum lycopersicum HOM05D001982 ORTHO05D003938 1.1e-06 57.0 147 29.3
AL6G18700 Arabidopsis lyrata HOM05D001982 ORTHO05D003938 1.4e-06 56.6 147 30.6
AT5G08300 Arabidopsis thaliana HOM05D001982 ORTHO05D003938 1.4e-06 56.6 147 30.6
CARHR204830 Cardamine hirsuta HOM05D001982 ORTHO05D003938 1.4e-06 56.6 147 30.6
Lj2g0016431 Lotus japonicus HOM05D001982 ORTHO05D003938 1.4e-06 56.6 157 27.4
SalBow6G6657 Salvia bowleyana HOM05D001982 ORTHO05D003938 1.4e-06 56.6 147 29.9
Mapoly0111s0054 Marchantia polymorpha HOM05D001982 ORTHO05D003938 1.9e-06 56.2 147 29.3
A03p46310 Brassica napus HOM05D001982 ORTHO05D003938 2.4e-06 55.8 147 29.9
C07p44330 Brassica napus HOM05D001982 ORTHO05D003938 2.4e-06 55.8 147 29.9
BolC7t44954H Brassica oleracea HOM05D001982 ORTHO05D003938 2.4e-06 55.8 147 29.9
BolC9t59610H Brassica oleracea HOM05D001982 ORTHO05D003938 2.4e-06 55.8 147 29.9
BraA03t13755Z Brassica rapa HOM05D001982 ORTHO05D003938 2.4e-06 55.8 147 29.9
Ah.01g001460 Amaranthus hybridus HOM05D003155 ORTHO05D003938 3.2e-06 55.5 147 30.6
Aqoxy3G04305 Aquilegia oxysepala HOM05D001982 ORTHO05D003938 4.2e-06 55.1 147 29.9
AagrBONN_evm.TU.Sc2ySwM_228.2462 Anthoceros agrestis HOM05D001982 ORTHO05D003938 9.3e-06 53.9 147 28.6
DCAR_002589 Daucus carota HOM05D001982 ORTHO05D003938 9.3e-06 53.9 147 30.6
Nitab4.5_0005012g0020 Nicotiana tabacum HOM05D001982 ORTHO05D003938 9.3e-06 53.9 144 29.2


User provided reference genes

Program Settings