Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 5.7e-181 637.9 428 100.0
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 1.1e-102 377.9 286 68.9
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.9e-100 369.0 282 67.7
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.4e-99 366.7 290 68.3
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 4.2e-99 365.9 290 68.3
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 6.0e-98 362.1 291 67.7
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 7.8e-98 361.7 292 66.8
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 9.6e-96 354.8 282 67.0
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.3e-95 354.4 287 66.6
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 3.6e-95 352.8 292 65.4
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 8.1e-95 351.7 285 66.3
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 8.1e-95 351.7 278 67.3
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.1e-94 351.3 277 67.1
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 1.1e-94 351.3 319 62.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 1.1e-94 351.3 298 61.4
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.1e-94 351.3 271 66.8
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.1e-94 351.3 280 65.4
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 1.8e-94 350.5 283 66.1
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 9.0e-94 348.2 291 64.9
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 9.0e-94 348.2 292 64.7
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.2e-93 347.8 275 66.2
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 2.0e-93 347.1 293 63.8
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 2.0e-93 347.1 304 61.2
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 3.4e-93 346.3 277 65.7
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 7.6e-93 345.1 277 65.0
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.7e-92 344.0 274 65.3
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 2.2e-92 343.6 299 61.2
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 8.4e-92 341.7 280 65.0
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 4.2e-91 339.3 287 63.8
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.7e-90 336.7 275 64.4
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 6.0e-90 335.5 244 68.9
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 6.0e-90 335.5 268 64.9
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.0e-89 334.7 258 67.8
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.0e-89 334.7 258 67.8
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 1.0e-89 334.7 302 61.3
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.0e-89 334.7 299 61.2
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 1.0e-89 334.7 265 66.0
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 1.3e-89 334.3 263 68.1
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 1.7e-89 334.0 277 63.2
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 3.9e-89 332.8 255 65.9
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 1.1e-88 331.3 278 62.9
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.5e-88 330.9 286 65.0
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.9e-88 330.5 296 61.5
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.5e-88 330.1 290 60.3
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.5e-88 330.1 240 70.4
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 3.3e-88 329.7 300 60.0
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 4.3e-88 329.3 279 63.4
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 5.6e-88 328.9 295 62.0
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 5.6e-88 328.9 295 62.0
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 7.3e-88 328.6 299 60.9
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 9.6e-88 328.2 278 61.9
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 1.6e-87 327.4 278 61.9
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 2.8e-87 326.6 278 61.5
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 4.8e-87 325.9 251 66.5
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 6.2e-87 325.5 298 61.7
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 1.8e-86 323.9 289 62.6
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.8e-86 323.9 281 61.6
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.4e-86 323.6 251 65.7
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 3.1e-86 323.2 278 61.5
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 3.1e-86 323.2 236 69.1
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 5.3e-86 322.4 225 71.1
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.9e-86 322.0 293 62.1
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 1.5e-85 320.9 278 61.5
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 2.0e-85 320.5 288 60.4
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.5e-85 319.3 293 61.8
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 7.6e-85 318.5 266 64.3
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 9.9e-85 318.2 239 69.0
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.3e-84 317.8 289 61.9
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 1.3e-84 317.8 290 59.3
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 1.7e-84 317.4 252 64.7
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 2.2e-84 317.0 223 71.3
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 3.8e-84 316.2 257 63.4
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 1.1e-83 314.7 278 60.4
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 1.4e-83 314.3 299 58.5
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.4e-83 314.3 295 59.3
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 3.2e-83 313.2 292 58.9
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 5.4e-83 312.4 293 58.7
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 7.1e-83 312.0 276 60.9
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 9.3e-83 311.6 331 55.6
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.2e-82 311.2 296 57.8
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 1.6e-82 310.8 281 58.7
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 1.6e-82 310.8 265 61.9
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-82 310.5 303 59.7
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 7.9e-82 308.5 299 57.2
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.8e-81 307.4 276 59.8
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 3.0e-81 306.6 294 58.8
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.0e-81 306.6 285 61.4
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 6.7e-81 305.4 294 57.1
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 2.5e-80 303.5 297 57.6
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.6e-79 300.8 293 59.4
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 3.7e-79 299.7 287 59.6
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 3.4e-77 293.1 207 70.5
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 5.8e-77 292.4 282 58.5
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.4e-75 287.7 286 57.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 1.4e-75 287.7 289 54.7
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 2.5e-75 287.0 290 54.8
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-74 284.6 282 57.8
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 3.5e-74 283.1 211 68.2
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.9e-73 279.6 282 57.8
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 4.3e-72 276.2 207 68.1
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 5.7e-72 275.8 291 56.0
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.3e-71 274.6 235 57.9
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 6.2e-71 272.3 233 58.4
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 9.0e-70 268.5 233 57.9
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 6.5e-68 262.3 231 58.0
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 8.4e-68 261.9 267 50.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 8.4e-68 261.9 267 50.9
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-64 251.5 190 68.4
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 6.3e-63 245.7 273 48.0
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.2e-61 241.5 230 51.7
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.4e-61 240.0 290 49.0
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 1.0e-60 238.4 303 45.5
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 2.1e-58 230.7 260 53.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.6e-58 229.9 213 58.2
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 9.7e-56 221.9 212 59.9
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 6.3e-55 219.2 229 54.1
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.6e-50 204.5 197 52.8
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 9.7e-48 195.3 297 43.8
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 4.8e-39 166.4 137 65.0
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.4e-38 164.9 110 70.9
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.0e-38 162.5 161 58.4
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.4e-24 116.7 106 50.9
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 2.0e-21 107.8 75 66.7
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 8.3e-15 85.9 235 29.4
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 1.4e-14 85.1 62 64.5
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.3e-12 77.8 252 27.4
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.7e-10 70.1 75 56.0


User provided reference genes

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