Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17526 Sapria himalayana HOM05D004343 ORTHO05D005695 1.5e-197 693.0 419 100.0
MD13G1093900 Malus domestica HOM05D004343 ORTHO05D005695 1.8e-22 111.3 58 87.9
MD16G1095200 Malus domestica HOM05D004343 ORTHO05D005695 1.8e-22 111.3 58 87.9
Prupe.1G251400 Prunus persica HOM05D004343 ORTHO05D005695 1.8e-22 111.3 58 87.9
THA.LOC104823649 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 1.8e-22 111.3 58 87.9
Sabra12G0053500 Salix brachista HOM05D004343 ORTHO05D005695 5.2e-22 109.8 59 83.1
GSVIVG01013767001 Vitis vinifera HOM05D004343 ORTHO05D005695 5.2e-22 109.8 58 86.2
Lj2g0023088 Lotus japonicus HOM05D004343 ORTHO05D005695 6.9e-22 109.4 58 86.2
Potri.012G075100 Populus trichocarpa HOM05D004343 ORTHO05D005695 6.9e-22 109.4 58 84.5
Aa31LG2G9960 Aethionema arabicum HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
BcaB07g31219 Brassica carinata HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
BcaC04g22231 Brassica carinata HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
A09p17490 Brassica napus HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
C09p21800 Brassica napus HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
BolC9t55085H Brassica oleracea HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
BraA09t37375Z Brassica rapa HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
CARHR052540 Cardamine hirsuta HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
Cpa.g.sc69.63 Carica papaya HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
CiPaw.06G071000 Carya illinoinensis HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
CDE05G0167 Ceratophyllum demersum HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
ClCG08G018000 Citrullus lanatus HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
Ciclev10030717m.g Citrus clementina HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
COL.COLO4_24195 Corchorus olitorius HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
MELO3C010667.2 Cucumis melo HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
CsaV3_2G024650 Cucumis sativus L. HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
Thhalv10023282m.g Eutrema salsugineum HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
FAN07G1173 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
FAN17G1932 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
FAN22G1014 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
QL03p059677 Quercus lobata HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
RcHm_v2.0_Chr4g0443651 Rosa chinensis HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
Sp2g04240 Schrenkiella parvula HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
Sed0015591 Sechium edule HOM05D004343 ORTHO05D005695 9.0e-22 109.0 58 86.2
CANSAT01G0446 Cannabis sativa HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 86.2
Dinv15280 Davidia involucrata HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 86.2
FvH4_4g34140 Fragaria vesca HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 84.5
FAN12G0317 Fragaria x ananassa HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 84.5
Sabra15G0094700 Salix brachista HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 82.8
TAR371G0394 Trochodendron aralioides HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 86.2
TAR622G0032 Trochodendron aralioides HOM05D004343 ORTHO05D005695 1.2e-21 108.6 58 86.2
arahy.Tifrunner.gnm1.ann1.V3QVP0 Arachis hypogaea HOM05D004343 ORTHO05D005695 1.5e-21 108.2 58 84.5
ECA246G3761 Erigeron canadensis HOM05D004343 ORTHO05D005695 1.5e-21 108.2 58 86.2
HanXRQChr14g0446801 Helianthus annuus HOM05D004343 ORTHO05D005695 1.5e-21 108.2 58 86.2
Lsat_1_v5_gn_4_161060 Lactuca sativa HOM05D004343 ORTHO05D005695 1.5e-21 108.2 58 86.2
Zm00001eb178330 Zea mays HOM05D004343 ORTHO05D005695 1.5e-21 108.2 59 83.1
ATR0624G072 Amborella trichopoda HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
AL2G16200 Arabidopsis lyrata HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
AT1G60490 Arabidopsis thaliana HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
arahy.Tifrunner.gnm1.ann1.NH5LZK Arachis hypogaea HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Carub.0002s0485 Capsella rubella HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Gohir.A01G161800 Gossypium hirsutum HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Gohir.D01G149200 Gossypium hirsutum HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Gorai.002G185300 Gossypium raimondii HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Manes.12G027200 Manihot esculenta HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Oeu022146.1 Olea europaea HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 86.2
Oeu054064.1 Olea europaea HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 86.2
Phvul.002G070100 Phaseolus vulgaris HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Thecc.02G252600 Theobroma cacao HOM05D004343 ORTHO05D005695 2.0e-21 107.8 58 84.5
Atru.chr11.2050 Acer truncatum HOM05D004343 ORTHO05D005695 2.6e-21 107.5 58 86.2
MBI16_g27084_MAGBIO Magnolia biondii HOM05D004343 ORTHO05D005695 2.6e-21 107.5 58 86.2
HanXRQChr17g0539451 Helianthus annuus HOM05D004343 ORTHO05D005695 3.4e-21 107.1 58 84.5
Lalb_Chr05g0216791 Lupinus albus HOM05D004343 ORTHO05D005695 3.4e-21 107.1 58 84.5
PGR119G1808 Punica granatum HOM05D004343 ORTHO05D005695 3.4e-21 107.1 58 84.5
Rhsim12G0115800 Rhododendron simsii HOM05D004343 ORTHO05D005695 3.4e-21 107.1 58 84.5
HPP92_021388 Vanilla planifolia HOM05D004343 ORTHO05D005695 3.4e-21 107.1 58 84.5
CSS0036353 Camellia sinensis var. sinensis HOM05D004343 ORTHO05D005695 4.4e-21 106.7 58 84.5
Eucgr.B01666 Eucalyptus grandis HOM05D004343 ORTHO05D005695 4.4e-21 106.7 58 82.8
Eucgr.H02571 Eucalyptus grandis HOM05D004343 ORTHO05D005695 4.4e-21 106.7 58 82.8
VMungo1215G0144 Vigna mungo HOM05D004343 ORTHO05D005695 4.4e-21 106.7 58 84.5
AUR62005396 Chenopodium quinoa HOM05D004343 ORTHO05D005695 5.8e-21 106.3 58 84.5
AUR62014058 Chenopodium quinoa HOM05D004343 ORTHO05D005695 5.8e-21 106.3 58 84.5
Dinv24834 Davidia involucrata HOM05D004343 ORTHO05D005695 5.8e-21 106.3 58 84.5
Hma1.2p1_0536F.1_g173910 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 5.8e-21 106.3 58 84.5
Nn2g14843 Nelumbo nucifera HOM05D004343 ORTHO05D005695 5.8e-21 106.3 58 84.5
SEGI_20330 Sequoiadendron giganteum HOM05D004343 ORTHO05D005695 5.8e-21 106.3 69 71.0
Ca_03146_v3 Cicer arietinum L. HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 82.8
DCAR_018086 Daucus carota HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 84.5
Duzib251G0882 Durio zibethinus HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 84.5
Os05g0180600 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 81.0
Hund25360 Selenicereus undatus HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 84.5
Sc04g0009240 Simmondsia chinensis HOM05D004343 ORTHO05D005695 7.6e-21 105.9 58 84.5
Aqoxy3G02910 Aquilegia oxysepala HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 82.8
Cc11_g15270 Coffea canephora HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 84.5
Duzib268G1271 Durio zibethinus HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 84.5
Hma1.2p1_0160F.1_g070980 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 82.8
SalBow8G4047 Salvia bowleyana HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 84.5
TWI36G0660 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 84.5
TWI75G1525 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 9.9e-21 105.5 58 84.5
Atru.chr13.1904 Acer truncatum HOM05D004343 ORTHO05D005695 1.3e-20 105.1 57 86.0
MSTRG.6617 Avicennia marina HOM05D004343 ORTHO05D005695 1.3e-20 105.1 58 84.5
Glyma.04G094500 Glycine max HOM05D004343 ORTHO05D005695 1.3e-20 105.1 58 82.8
Glyma.06G096300 Glycine max HOM05D004343 ORTHO05D005695 1.3e-20 105.1 58 82.8
Medtr5g034120 Medicago truncatula HOM05D004343 ORTHO05D005695 1.3e-20 105.1 58 82.8
Actinidia15052 Actinidia chinensis HOM05D004343 ORTHO05D005695 1.7e-20 104.8 58 82.8
Lalb_Chr09g0326321 Lupinus albus HOM05D004343 ORTHO05D005695 1.7e-20 104.8 58 82.8
Nitab4.5_0001663g0240 Nicotiana tabacum HOM05D004343 ORTHO05D005695 1.7e-20 104.8 61 77.0
Lj6A807T88 Lonicera japonica HOM05D004343 ORTHO05D005695 2.2e-20 104.4 58 82.8
SGA_v2.0_scaffold181G39704 Striga asiatica HOM05D004343 ORTHO05D005695 2.2e-20 104.4 58 84.5
THA.LOC104809607 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 2.9e-20 104.0 58 81.0
vmacro16235 Vaccinium macrocarpon HOM05D004343 ORTHO05D005695 3.8e-20 103.6 52 90.4
C05p51050 Brassica napus HOM05D004343 ORTHO05D005695 4.9e-20 103.2 58 81.0
CAN.G1905.4 Capsicum annuum HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 79.3
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 81.0
Haze_12200 Corylus avellana HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 81.0
Nitab4.5_0000147g0050 Nicotiana tabacum HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 79.3
PSO675G7676 Papaver somniferum HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 81.0
Peaxi162Scf01286g00001 Petunia axillaris HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 79.3
Solyc04g015350.3 Solanum lycopersicum HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 79.3
Sopen04g007420 Solanum pennellii HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 79.3
TPR.G21086 Trifolium pratense HOM05D004343 ORTHO05D005695 6.4e-20 102.8 58 81.0
Ah.03g132780 Amaranthus hybridus HOM05D004343 ORTHO05D005695 8.4e-20 102.4 58 81.0
BcaC06g31812 Brassica carinata HOM05D004343 ORTHO05D005695 8.4e-20 102.4 52 88.5
Psat2g104920 Pisum sativum HOM05D004343 ORTHO05D005695 1.1e-19 102.1 58 81.0
SEGI_24951 Sequoiadendron giganteum HOM05D004343 ORTHO05D005695 1.1e-19 102.1 61 75.4
EL10Ac6g13693 Beta vulgaris HOM05D004343 ORTHO05D005695 3.2e-19 100.5 58 81.0
BcaC02g10625 Brassica carinata HOM05D004343 ORTHO05D005695 4.2e-19 100.1 58 79.3
C04p25940 Brassica napus HOM05D004343 ORTHO05D005695 4.2e-19 100.1 58 79.3
Migut.M00070 Erythranthe guttata HOM05D004343 ORTHO05D005695 4.2e-19 100.1 58 79.3
AagrBONN_evm.TU.Sc2ySwM_228.633 Anthoceros agrestis HOM05D004343 ORTHO05D005695 2.7e-18 97.4 58 70.7
Mapoly0003s0185 Marchantia polymorpha HOM05D004343 ORTHO05D005695 1.0e-17 95.5 59 67.8
Pp3c10_8910 Physcomitrium patens HOM05D004343 ORTHO05D005695 1.0e-17 95.5 58 72.4
TPR.G40832 Trifolium pratense HOM05D004343 ORTHO05D005695 3.3e-16 90.5 52 78.8
SMO134G0165 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 4.3e-16 90.1 58 63.8
Os08g0307400 Oryza sativa ssp. japonica HOM05D004343 ORTHO05D005695 9.6e-16 89.0 58 72.4
Eucgr.B01668 Eucalyptus grandis HOM05D004343 ORTHO05D005695 2.8e-15 87.4 40 95.0
SMO228G0017 Selaginella moellendorffii HOM05D004343 ORTHO05D005695 1.8e-14 84.7 58 63.8
CBR_g5616 Chara braunii HOM05D004343 ORTHO05D005695 5.8e-13 79.7 58 60.3
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.4e-11 75.1 137 47.4
Cre01.g035500 Chlamydomonas reinhardtii HOM05D004343 ORTHO05D005695 3.5e-10 70.5 58 51.7
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 4.6e-10 70.1 81 49.4
MCO10G171 Micromonas commoda HOM05D004343 ORTHO05D005695 6.0e-10 69.7 58 50.0
SHI37967 Sapria himalayana HOM05D000002 ORTHO05D000001 6.0e-10 69.7 49 71.4
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 7.9e-10 69.3 46 78.3
PRCOL_00000780 Prasinoderma coloniale HOM05D004343 ORTHO05D005695 3.0e-09 67.4 58 44.8
SHI26361 Sapria himalayana HOM05D026459 ORTHO05D004268 6.7e-09 66.2 96 51.0
SHI15560 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-08 65.1 45 75.6
SHI11645 Sapria himalayana HOM05D000023 ORTHO05D030572 2.5e-08 64.3 41 80.5
SHI25794 Sapria himalayana HOM05D000023 ORTHO05D016154 3.3e-08 63.9 38 76.3
SHI07350 Sapria himalayana HOM05D000023 ORTHO05D000014 4.3e-08 63.5 63 58.7
SHI35704 Sapria himalayana HOM05D000023 ORTHO05D000014 4.3e-08 63.5 39 79.5
SHI21003 Sapria himalayana HOM05D000629 ORTHO05D016154 2.1e-07 61.2 203 32.5
SHI33167 Sapria himalayana HOM05D000023 ORTHO05D000014 2.1e-07 61.2 41 78.0
SHI06546 Sapria himalayana HOM05D015319 ORTHO05D030572 2.8e-07 60.8 40 75.0
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 4.8e-07 60.1 38 81.6
SHI03836 Sapria himalayana HOM05D015319 ORTHO05D030572 6.2e-07 59.7 50 64.0
SHI16273 Sapria himalayana HOM05D000023 ORTHO05D000014 4.0e-06 57.0 138 50.7


User provided reference genes

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