Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 2.7e-111 405.2 190 100.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 2.8e-79 298.9 204 70.6
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.8e-79 298.9 205 70.2
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 1.4e-78 296.6 183 74.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.3e-78 295.8 182 75.8
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 2.3e-78 295.8 203 70.9
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 3.1e-78 295.4 205 71.2
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 8.9e-78 293.9 206 69.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.2e-77 293.5 205 69.3
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 3.4e-77 292.0 202 70.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.4e-77 292.0 182 75.3
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 4.4e-77 291.6 205 68.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 5.8e-77 291.2 205 68.3
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 7.5e-77 290.8 205 69.3
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.3e-76 290.0 201 67.2
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 2.2e-76 289.3 210 68.1
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.7e-76 288.5 205 69.3
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.7e-76 288.5 182 74.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 4.9e-76 288.1 205 67.3
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 8.3e-76 287.3 205 68.3
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.1e-75 287.0 208 67.8
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.4e-75 286.6 207 67.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.9e-75 286.2 204 67.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.9e-75 286.2 205 68.3
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.9e-75 286.2 207 65.7
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.4e-75 285.8 205 68.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.2e-75 285.4 205 67.8
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.1e-75 285.0 207 65.7
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 4.1e-75 285.0 207 65.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 5.4e-75 284.6 205 66.3
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 7.1e-75 284.3 205 67.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 7.1e-75 284.3 211 66.4
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 9.2e-75 283.9 205 67.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.2e-75 283.9 205 67.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 9.2e-75 283.9 205 67.3
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 9.2e-75 283.9 205 67.3
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 9.2e-75 283.9 208 67.3
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.2e-74 283.5 205 65.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.6e-74 283.1 202 67.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 2.1e-74 282.7 205 64.9
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 3.5e-74 282.0 204 68.6
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 4.6e-74 281.6 204 67.6
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 7.8e-74 280.8 204 66.2
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.0e-73 280.4 204 66.2
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.3e-73 280.0 204 66.7
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.3e-73 280.0 204 66.7
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.3e-73 279.3 205 64.9
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 3.0e-73 278.9 205 64.9
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.0e-73 278.9 205 64.9
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.0e-73 278.9 205 66.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 3.0e-73 278.9 205 65.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 3.9e-73 278.5 205 65.9
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 3.9e-73 278.5 205 64.9
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 3.9e-73 278.5 205 65.9
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 3.9e-73 278.5 211 65.4
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 5.1e-73 278.1 205 64.4
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 6.6e-73 277.7 204 64.7
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 6.6e-73 277.7 205 64.4
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 6.6e-73 277.7 205 65.4
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 6.6e-73 277.7 204 67.2
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 6.6e-73 277.7 224 62.5
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 8.6e-73 277.3 205 64.4
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 8.6e-73 277.3 205 66.3
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 8.6e-73 277.3 205 65.4
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 1.5e-72 276.6 216 62.5
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.9e-72 276.2 211 62.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.9e-72 276.2 204 65.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.9e-72 276.2 204 65.2
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.5e-72 275.8 203 64.5
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.3e-72 275.4 207 63.8
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 3.3e-72 275.4 205 64.9
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 4.3e-72 275.0 204 66.2
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 4.3e-72 275.0 204 66.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 5.6e-72 274.6 200 67.0
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 5.6e-72 274.6 203 65.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 7.3e-72 274.2 204 63.7
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 7.3e-72 274.2 204 66.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 9.5e-72 273.9 204 63.7
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 9.5e-72 273.9 204 64.2
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 9.5e-72 273.9 204 64.7
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.2e-71 273.5 204 64.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.2e-71 273.5 207 64.3
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.1e-71 272.7 205 63.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 2.8e-71 272.3 201 64.7
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.6e-71 271.9 222 59.5
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 8.9e-70 267.3 205 64.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 8.9e-70 267.3 213 61.0
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.5e-69 266.5 205 62.4
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 7.6e-69 264.2 200 63.0
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.3e-68 263.5 203 64.0
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.4e-67 259.2 205 62.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.7e-66 255.8 203 64.5
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 4.6e-66 255.0 186 65.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 4.6e-66 255.0 203 64.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 3.9e-65 251.9 210 60.0
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.1e-65 251.5 204 57.8
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 6.6e-65 251.1 196 63.3
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.6e-64 247.3 203 58.6
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 6.8e-62 241.1 205 54.6
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 5.8e-61 238.0 204 54.9
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 3.8e-60 235.3 202 54.5
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.3e-57 226.9 205 58.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.3e-49 200.3 134 67.2
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 9.6e-48 194.1 152 63.8
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.3e-47 193.7 204 45.1
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 4.0e-46 188.7 207 49.8
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.4e-38 163.7 250 36.8
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 4.0e-38 162.2 167 44.9
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 3.2e-35 152.5 181 43.1
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.0e-21 106.7 75 60.0
COL.COLO4_09445 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.6e-18 97.1 79 63.3
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 2.7e-18 96.3 92 52.2
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.3e-16 89.4 49 81.6
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 2.8e-15 86.3 143 35.7
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.8e-15 86.3 178 33.1
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-14 84.3 141 36.2
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.8e-14 83.6 170 31.2
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 5.3e-14 82.0 164 32.3
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 1.5e-13 80.5 164 31.1
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.6e-13 79.7 170 31.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 4.5e-13 79.0 164 31.1
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 4.5e-13 79.0 166 31.3
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 7.7e-13 78.2 164 31.1
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 2.9e-12 76.3 164 32.3
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 5.0e-12 75.5 200 28.5
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 6.5e-12 75.1 147 33.3
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.1e-11 74.3 148 31.8
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.9e-11 73.6 200 28.0
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.5e-11 73.2 125 36.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 3.2e-11 72.8 121 35.5
Lsat_1_v5_gn_7_50160 Lactuca sativa HOM05D002270 ORTHO05D003355 4.4e-08 62.4 42 64.3
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 1.7e-07 60.5 59 44.1


User provided reference genes

Program Settings