Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 7.2e-99 364.0 195 100.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.2e-61 240.4 200 70.5
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 3.4e-56 222.2 219 62.1
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.9e-55 218.4 217 59.0
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 4.9e-55 218.4 214 64.5
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.4e-55 218.0 217 63.1
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.4e-55 218.0 217 63.1
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.1e-54 217.2 199 66.8
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.1e-54 217.2 211 61.6
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 9.2e-54 214.2 198 65.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.6e-53 211.8 220 60.5
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.0e-53 211.5 217 62.7
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.0e-52 210.7 220 60.5
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.0e-52 210.7 199 63.8
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 6.6e-52 208.0 198 64.6
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 8.6e-52 207.6 202 62.4
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.6e-51 204.9 214 58.4
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.3e-51 204.5 198 62.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 7.3e-51 204.5 203 62.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.2e-50 203.8 205 60.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.6e-50 203.4 202 62.4
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.8e-50 202.6 200 62.0
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 4.7e-50 201.8 199 59.8
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 4.7e-50 201.8 209 58.4
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.1e-50 201.1 202 60.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.8e-49 199.9 196 63.3
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 3.1e-49 199.1 200 59.5
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.0e-49 198.7 191 60.2
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.2e-49 198.4 120 85.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 6.8e-49 198.0 196 58.7
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 6.8e-49 198.0 200 61.0
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 8.9e-49 197.6 119 84.9
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-48 197.2 193 63.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.5e-48 196.8 191 62.8
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.5e-48 196.8 120 85.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.0e-48 196.4 209 57.4
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.0e-48 196.4 209 57.4
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.4e-48 195.3 204 58.3
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 5.8e-48 194.9 203 58.1
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 7.5e-48 194.5 199 58.8
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 7.5e-48 194.5 199 61.3
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.5e-48 194.5 202 58.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.3e-47 193.7 196 60.7
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.3e-47 193.7 198 58.6
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.9e-47 192.6 200 59.5
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-47 192.2 200 57.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.9e-47 191.8 208 58.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 6.4e-47 191.4 222 55.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 6.4e-47 191.4 120 80.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.4e-47 191.4 211 55.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.1e-46 190.7 191 61.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.9e-46 189.9 206 59.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.4e-46 189.5 120 79.2
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.4e-46 189.5 195 60.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.4e-46 189.5 191 60.7
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.2e-46 189.1 193 60.6
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.2e-46 189.1 199 57.3
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.2e-46 189.1 199 57.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 4.1e-46 188.7 205 58.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 4.1e-46 188.7 197 55.8
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.4e-46 188.3 200 56.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 7.1e-46 188.0 120 80.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 7.1e-46 188.0 214 55.1
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 9.2e-46 187.6 202 59.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 9.2e-46 187.6 186 60.2
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.1e-45 186.4 223 53.8
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.1e-45 186.4 223 53.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 2.1e-45 186.4 196 58.2
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.1e-45 186.4 208 57.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.7e-45 186.0 202 60.4
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.7e-45 186.0 197 58.9
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.5e-45 185.7 120 75.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.5e-45 185.7 120 75.8
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 3.5e-45 185.7 120 76.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 3.5e-45 185.7 120 80.0
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 4.6e-45 185.3 115 80.9
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.6e-45 185.3 201 56.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.6e-45 185.3 119 76.5
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.0e-45 184.9 120 76.7
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 6.0e-45 184.9 120 79.2
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 7.8e-45 184.5 119 76.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.0e-44 184.1 203 57.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.0e-44 184.1 202 57.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.0e-44 184.1 195 58.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.0e-44 184.1 224 51.8
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-44 183.7 120 75.8
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.3e-44 183.7 120 75.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.3e-44 183.7 120 75.8
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.7e-44 183.3 215 54.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.7e-44 183.3 120 75.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.7e-44 183.3 204 57.8
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.7e-44 183.3 120 75.8
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.7e-44 183.3 219 52.1
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.3e-44 183.0 211 56.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.3e-44 183.0 201 57.2
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 3.9e-44 182.2 120 75.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 3.9e-44 182.2 199 55.3
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 5.1e-44 181.8 119 78.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.6e-44 181.0 222 50.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 8.6e-44 181.0 119 74.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.5e-43 180.3 134 74.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.5e-43 180.3 184 62.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.5e-43 179.5 190 62.6
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 4.3e-43 178.7 199 57.8
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.6e-43 178.3 155 63.9
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.3e-43 177.9 221 51.1
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.6e-42 176.8 119 77.3
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.8e-42 176.0 200 55.5
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.6e-42 175.6 119 76.5
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 5.2e-41 171.8 196 56.1
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 6.4e-39 164.9 127 67.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.4e-38 163.7 99 83.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 5.4e-38 161.8 102 81.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 5.4e-38 161.8 192 52.6
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-37 160.6 182 53.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.2e-37 160.6 182 53.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.0e-36 157.5 98 81.6
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.6e-36 154.5 197 51.3
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.1e-35 154.1 192 51.6
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.9e-35 153.3 133 62.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-33 147.5 191 50.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.9e-33 144.8 102 73.5
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 2.0e-32 143.3 91 75.8
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-31 140.6 101 73.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 6.4e-31 138.3 142 57.7
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-30 136.7 128 60.2
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 9.3e-30 134.4 106 67.0
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.3e-30 134.4 166 54.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.6e-29 133.7 117 60.7
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 2.1e-29 133.3 121 60.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 3.5e-29 132.5 122 60.7
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.5e-29 132.5 121 55.4
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 3.5e-29 132.5 184 44.0
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 4.6e-29 132.1 200 43.5
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-29 131.7 200 44.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.8e-29 131.3 102 68.6
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-28 129.4 163 54.6
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.9e-28 129.0 187 49.2
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-28 129.0 120 59.2
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-27 127.5 189 49.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 9.6e-27 124.4 126 55.6
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-25 120.6 166 51.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 2.9e-23 112.8 96 56.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.8e-20 103.6 204 42.2
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.0e-20 102.8 82 67.1
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 3.1e-17 92.8 132 50.8
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 9.0e-17 91.3 141 46.8
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-16 90.1 74 63.5
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.1e-14 84.3 155 43.9
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.4e-14 83.2 130 50.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.4e-14 83.2 45 88.9
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 5.5e-14 82.0 58 69.0
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 6.0e-13 78.6 111 42.3
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.3e-10 70.9 99 36.4
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.8e-09 67.0 100 44.0
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 3.4e-08 62.8 46 67.4
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.0e-07 61.2 153 38.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-07 59.7 36 72.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.9e-06 57.0 32 78.1
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 5.5e-06 55.5 100 47.0


User provided reference genes

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