Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 8.6e-134 480.3 243 100.0
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 1.6e-84 316.6 213 75.6
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 1.8e-83 313.2 227 71.8
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 2.4e-83 312.8 213 75.1
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 5.3e-83 311.6 213 74.6
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 5.3e-83 311.6 213 74.6
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 9.0e-83 310.8 213 76.1
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 9.0e-83 310.8 227 71.8
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 2.0e-82 309.7 244 68.0
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.5e-82 308.5 213 73.7
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 7.6e-82 307.8 213 75.1
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.4e-80 303.5 212 74.1
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 1.4e-80 303.5 243 65.8
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 3.2e-80 302.4 212 72.6
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 3.2e-80 302.4 213 72.8
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 5.5e-80 301.6 243 66.7
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 5.5e-80 301.6 227 70.5
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 9.3e-80 300.8 226 71.2
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.2e-79 300.4 213 72.3
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 1.2e-79 300.4 213 74.2
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 3.5e-79 298.9 243 64.6
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 3.5e-79 298.9 213 71.4
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 3.5e-79 298.9 213 73.2
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 3.5e-79 298.9 213 73.2
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 4.6e-79 298.5 227 70.0
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.6e-79 298.5 203 74.4
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 6.0e-79 298.1 213 71.8
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 6.0e-79 298.1 213 71.4
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 6.0e-79 298.1 213 71.8
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 7.9e-79 297.7 213 71.4
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 1.0e-78 297.4 213 73.2
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 1.3e-78 297.0 237 67.1
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 1.8e-78 296.6 213 70.9
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 3.0e-78 295.8 213 70.4
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 3.0e-78 295.8 212 72.2
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 5.1e-78 295.0 213 70.9
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 5.1e-78 295.0 213 70.4
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 6.7e-78 294.7 206 70.9
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 6.7e-78 294.7 213 70.0
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 6.7e-78 294.7 213 70.0
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 6.7e-78 294.7 213 70.4
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 8.7e-78 294.3 213 72.8
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.1e-77 293.9 213 69.5
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.1e-77 293.9 213 71.4
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.5e-77 293.5 213 72.3
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.9e-77 293.1 214 71.5
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 1.9e-77 293.1 237 66.2
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-77 292.7 237 66.2
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-77 292.7 237 66.2
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 3.3e-77 292.4 213 71.4
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 4.3e-77 292.0 213 70.9
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 4.3e-77 292.0 213 70.4
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 5.6e-77 291.6 213 68.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 5.6e-77 291.6 212 71.2
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 7.4e-77 291.2 243 62.1
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.3e-76 290.4 213 71.8
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 1.6e-76 290.0 213 70.9
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 2.1e-76 289.7 213 69.0
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 2.1e-76 289.7 213 70.9
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 2.1e-76 289.7 213 70.9
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 2.8e-76 289.3 227 67.8
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 2.8e-76 289.3 213 69.0
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 3.7e-76 288.9 213 69.0
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 6.2e-76 288.1 227 67.8
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 6.2e-76 288.1 213 69.0
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 8.2e-76 287.7 213 68.5
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 8.2e-76 287.7 213 70.9
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 8.2e-76 287.7 213 68.5
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 1.1e-75 287.3 204 70.6
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 1.1e-75 287.3 213 69.0
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.4e-75 287.0 213 68.1
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 1.4e-75 287.0 213 70.0
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 1.8e-75 286.6 213 69.0
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 2.4e-75 286.2 213 68.1
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 2.4e-75 286.2 213 69.5
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 3.1e-75 285.8 213 67.1
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 3.1e-75 285.8 213 68.1
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 4.0e-75 285.4 213 69.0
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 5.3e-75 285.0 213 67.6
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 5.3e-75 285.0 211 66.8
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 5.3e-75 285.0 204 72.5
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 6.9e-75 284.6 213 68.1
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 6.9e-75 284.6 213 68.1
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 9.0e-75 284.3 212 67.5
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 9.0e-75 284.3 243 61.3
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.2e-74 283.9 213 68.1
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.2e-74 283.9 213 68.1
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 1.2e-74 283.9 213 68.1
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.2e-74 283.9 211 66.8
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.5e-74 283.5 211 68.2
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 1.5e-74 283.5 213 68.5
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 1.5e-74 283.5 212 68.9
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 2.0e-74 283.1 243 60.9
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 2.6e-74 282.7 213 67.6
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 2.6e-74 282.7 213 67.6
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 2.6e-74 282.7 213 66.7
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 3.4e-74 282.3 237 63.7
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 4.5e-74 282.0 213 67.1
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 4.5e-74 282.0 213 67.1
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 5.8e-74 281.6 213 67.1
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 5.8e-74 281.6 213 67.1
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 5.8e-74 281.6 237 63.7
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 7.6e-74 281.2 193 73.6
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 7.6e-74 281.2 243 60.5
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 2.9e-73 279.3 221 65.6
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 3.8e-73 278.9 213 67.6
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 2.5e-72 276.2 213 66.7
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.2e-72 275.8 191 72.3
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 5.5e-72 275.0 227 62.6
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 7.1e-72 274.6 191 73.3
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 9.3e-72 274.2 204 67.6
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 9.3e-72 274.2 213 66.7
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 9.3e-72 274.2 213 66.7
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.2e-71 273.9 213 66.7
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 2.7e-71 272.7 213 64.8
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 2.7e-71 272.7 203 67.5
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 4.6e-71 271.9 204 67.2
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 2.3e-70 269.6 213 64.8
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 3.9e-70 268.9 204 66.2
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 3.9e-70 268.9 213 65.3
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 6.7e-70 268.1 193 68.9
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-69 266.5 191 69.1
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 2.5e-69 266.2 191 69.1
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 2.4e-67 259.6 213 62.0
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 3.1e-67 259.2 213 62.0
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.0e-66 256.5 215 61.9
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 2.9e-65 252.7 216 64.4
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 3.8e-65 252.3 215 61.4
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.9e-64 250.0 213 59.6
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 5.5e-64 248.4 214 61.2
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.6e-63 246.9 166 74.7
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 1.0e-62 244.2 206 58.3
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.8e-62 243.4 204 57.8
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 5.1e-62 241.9 206 60.7
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 6.7e-62 241.5 204 58.8
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.0e-61 240.0 212 61.8
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 5.0e-57 225.3 258 51.6
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 9.4e-56 221.1 146 73.3
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 2.6e-53 213.0 212 54.7
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 1.2e-47 194.1 211 54.0
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 1.1e-45 187.6 209 46.9
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 4.4e-45 185.7 189 54.5
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 5.3e-43 178.7 140 66.4
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 1.5e-40 170.6 207 45.9
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 4.2e-40 169.1 115 73.0
PRCOL_00006634 Prasinoderma coloniale HOM05D003431 ORTHO05D005152 1.5e-37 160.6 203 43.3
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 2.7e-34 149.8 138 59.4
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 7.5e-29 131.7 215 35.3
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 1.0e-25 121.3 86 65.1
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 2.3e-25 120.2 128 53.1
MELO3C023261.2 Cucumis melo HOM05D003431 ORTHO05D005152 1.2e-23 114.4 97 62.9
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 1.6e-23 114.0 114 51.8
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 1.4e-22 110.9 97 53.6
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 1.4e-22 110.9 97 53.6
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 4.0e-22 109.4 97 53.6
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 3.7e-20 102.8 118 50.8
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 2.4e-19 100.1 82 62.2
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.1e-19 99.4 65 76.9
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 4.1e-19 99.4 66 75.8
ATR0085G001 Amborella trichopoda HOM05D003431 ORTHO05D014368 5.4e-19 99.0 70 65.7
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 1.6e-18 97.4 87 57.5
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 5.9e-18 95.5 69 66.7
SEGI_37042 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.7e-17 94.0 107 49.5
MELO3C034572.2 Cucumis melo HOM05D003431 ORTHO05D005152 7.3e-16 88.6 61 70.5
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 1.8e-14 84.0 139 38.1
COL.COLO4_17896 Corchorus olitorius HOM05D003431 ORTHO05D005152 3.1e-14 83.2 78 62.8
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 2.0e-13 80.5 60 68.3
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 5.8e-13 79.0 74 50.0
Dinv19351 Davidia involucrata HOM05D003431 ORTHO05D005152 9.8e-13 78.2 81 59.3
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 2.2e-12 77.0 65 58.5
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 3.7e-12 76.3 56 64.3
CsaV3_1G025580 Cucumis sativus L. HOM05D003431 ORTHO05D005152 1.4e-11 74.3 57 63.2
HanXRQChr10g0305141 Helianthus annuus HOM05D003431 ORTHO05D005152 3.2e-11 73.2 56 67.9
C06p34150 Brassica napus HOM05D003431 ORTHO05D014368 4.1e-11 72.8 64 54.7
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 7.0e-11 72.0 60 58.3
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 6.0e-10 68.9 41 78.0
TAR636G2181 Trochodendron aralioides HOM05D003431 ORTHO05D005152 6.0e-10 68.9 43 74.4
BcaC05g24499 Brassica carinata HOM05D003431 ORTHO05D014368 2.3e-09 67.0 122 37.7
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 1.1e-08 64.7 63 54.0
Actinidia00219 Actinidia chinensis HOM05D003431 ORTHO05D056071 7.3e-08 62.0 141 38.3
A05p13450 Brassica napus HOM05D003431 ORTHO05D100885 4.7e-07 59.3 104 37.5
HanXRQChr07g0193031 Helianthus annuus HOM05D003431 ORTHO05D004801 1.4e-06 57.8 41 65.9


User provided reference genes

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