Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 7.6e-83 310.5 158 100.0
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.2e-24 117.1 158 51.3
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.2e-24 117.1 160 47.5
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.1e-24 116.3 158 50.6
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.8e-24 115.9 158 48.7
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.6e-24 115.5 158 46.2
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.6e-24 115.5 158 50.6
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 3.6e-24 115.5 159 49.1
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.0e-23 114.0 158 46.8
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.4e-23 113.6 158 44.9
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.4e-23 113.6 158 46.2
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 5.2e-23 111.7 156 44.9
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 5.2e-23 111.7 156 44.9
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 5.2e-23 111.7 158 47.5
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.6e-22 109.4 158 46.8
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.6e-22 109.4 158 43.7
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.4e-22 109.0 158 44.9
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.4e-22 108.6 158 44.9
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 4.4e-22 108.6 158 46.8
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.8e-22 108.2 158 44.3
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 7.5e-22 107.8 158 46.2
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 7.5e-22 107.8 158 46.2
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 7.5e-22 107.8 158 44.9
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 9.8e-22 107.5 158 42.4
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 9.8e-22 107.5 158 44.9
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.3e-21 107.1 158 45.6
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.7e-21 106.7 158 44.9
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.7e-21 106.7 158 47.5
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 3.7e-21 105.5 160 45.0
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 3.7e-21 105.5 158 45.6
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 4.9e-21 105.1 158 45.6
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.1e-20 104.0 158 42.4
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 1.1e-20 104.0 158 44.9
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 1.9e-20 103.2 158 46.8
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 4.1e-20 102.1 158 44.9
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 5.4e-20 101.7 161 44.7
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 9.2e-20 100.9 158 40.5
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.2e-19 100.5 160 43.8
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.2e-19 100.5 158 43.7
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.6e-19 100.1 160 43.1
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.6e-19 100.1 158 43.7
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.6e-19 100.1 160 43.1
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 2.0e-19 99.8 160 43.1
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 3.5e-19 99.0 161 42.2
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 3.5e-19 99.0 159 44.0
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 3.5e-19 99.0 158 40.5
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 4.6e-19 98.6 161 43.5
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 6.0e-19 98.2 158 42.4
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 6.0e-19 98.2 158 42.4
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 7.8e-19 97.8 158 41.8
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.0e-18 97.4 158 41.8
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.0e-18 97.4 158 43.0
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.0e-18 97.4 158 41.1
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.0e-18 97.4 158 44.3
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.3e-18 97.1 158 39.2
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 1.7e-18 96.7 159 42.1
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 2.3e-18 96.3 158 42.4
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 3.9e-18 95.5 159 45.3
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 3.9e-18 95.5 158 40.5
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 3.9e-18 95.5 157 40.1
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 5.0e-18 95.1 155 40.0
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 8.6e-18 94.4 156 42.3
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 8.6e-18 94.4 156 42.9
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.9e-17 93.2 156 40.4
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.9e-17 93.2 162 42.6
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 4.3e-17 92.0 169 40.8
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 4.3e-17 92.0 159 42.8
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 5.6e-17 91.7 157 39.5
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 7.3e-17 91.3 159 39.0
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 7.3e-17 91.3 157 43.3
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.6e-16 90.1 157 41.4
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.8e-16 89.4 159 42.1
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.8e-16 89.4 156 37.8
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.8e-16 89.4 158 38.6
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 3.6e-16 89.0 156 39.7
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 4.7e-16 88.6 157 40.1
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.1e-15 87.4 157 40.8
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 1.8e-15 86.7 156 38.5
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 1.8e-15 86.7 160 40.0
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 4.0e-15 85.5 137 45.3
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 4.0e-15 85.5 137 45.3
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 5.2e-15 85.1 156 38.5
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 6.8e-15 84.7 156 37.8
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 8.9e-15 84.3 161 36.0
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.5e-14 83.6 156 37.8
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 1.5e-14 83.6 156 37.8
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.0e-14 83.2 118 39.8
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 2.0e-14 83.2 136 45.6
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 3.4e-14 82.4 156 37.2
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 3.4e-14 82.4 156 37.2
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 3.4e-14 82.4 156 38.5
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 4.4e-14 82.0 156 38.5
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 7.5e-14 81.3 157 38.2
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 7.5e-14 81.3 157 38.2
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 7.5e-14 81.3 156 37.8
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 4.9e-13 78.6 156 37.8
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 6.4e-13 78.2 143 38.5
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 3.2e-12 75.9 149 37.6
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.2e-11 73.9 151 36.4
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.6e-11 73.6 158 38.6
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 2.7e-11 72.8 156 37.8
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 2.7e-11 72.8 147 37.4
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 3.5e-11 72.4 159 39.0
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 6.2e-08 61.6 73 49.3
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 8.1e-08 61.2 156 32.7


User provided reference genes

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