Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI15670 Sapria himalayana HOM05D000115 ORTHO05D370050 3.7e-38 161.0 78 100.0
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.2e-12 76.3 55 65.5
PGR042G1481 Punica granatum HOM05D000115 ORTHO05D005317 3.9e-11 71.2 38 81.6
COL.COLO4_33710 Corchorus olitorius HOM05D000115 ORTHO05D005317 5.0e-11 70.9 45 73.3
vmacro12438 Vaccinium macrocarpon HOM05D000115 ORTHO05D005317 6.6e-11 70.5 38 78.9
BolC4t28491H Brassica oleracea HOM05D000115 ORTHO05D005317 8.6e-11 70.1 38 78.9
Potri.014G141800 Populus trichocarpa HOM05D000115 ORTHO05D005317 8.6e-11 70.1 38 78.9
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 8.6e-11 70.1 45 73.3
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 1.1e-10 69.7 42 71.4
FAN05G2006 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.1e-10 69.7 45 73.3
FAN14G5116 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.1e-10 69.7 45 73.3
ATR0602G177 Amborella trichopoda HOM05D000115 ORTHO05D005317 1.5e-10 69.3 38 76.3
MSTRG.15059 Avicennia marina HOM05D000115 ORTHO05D005317 1.5e-10 69.3 38 78.9
CDE02G1626 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 1.5e-10 69.3 42 66.7
CDE06G1396 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 1.5e-10 69.3 42 66.7
Cc05_g09190 Coffea canephora HOM05D000115 ORTHO05D005317 1.5e-10 69.3 40 75.0
Manes.02G086700 Manihot esculenta HOM05D000115 ORTHO05D005317 1.5e-10 69.3 38 78.9
Sc12g0003720 Simmondsia chinensis HOM05D000115 ORTHO05D005317 1.5e-10 69.3 38 78.9
FvH4_6g37780 Fragaria vesca HOM05D000115 ORTHO05D005317 1.9e-10 68.9 45 73.3
FAN09G3340 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.9e-10 68.9 45 73.3
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 1.9e-10 68.9 38 76.3
RcHm_v2.0_Chr2g0150851 Rosa chinensis HOM05D000115 ORTHO05D005317 1.9e-10 68.9 45 73.3
Sed0008288 Sechium edule HOM05D000115 ORTHO05D005317 1.9e-10 68.9 45 68.9
Aqoxy1G01905 Aquilegia oxysepala HOM05D000115 ORTHO05D005317 2.5e-10 68.6 38 73.7
Eucgr.A01959 Eucalyptus grandis HOM05D000115 ORTHO05D005317 2.5e-10 68.6 38 76.3
Rhsim06G0121700 Rhododendron simsii HOM05D000115 ORTHO05D005317 2.5e-10 68.6 38 76.3
SalBow7G3865 Salvia bowleyana HOM05D000115 ORTHO05D005317 2.5e-10 68.6 60 55.0
SGA_v2.0_scaffold9G04898 Striga asiatica HOM05D000115 ORTHO05D005317 2.5e-10 68.6 38 76.3
Haze_13473 Corylus avellana HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
CsaV3_6G037960 Cucumis sativus L. HOM05D000115 ORTHO05D005317 3.3e-10 68.2 40 70.0
Glyma.08G311000 Glycine max HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
Glyma.18G104600 Glycine max HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
Gohir.A10G100700 Gossypium hirsutum HOM05D000115 ORTHO05D005317 3.3e-10 68.2 45 71.1
Gohir.D10G088200 Gossypium hirsutum HOM05D000115 ORTHO05D005317 3.3e-10 68.2 45 71.1
Gorai.011G097000 Gossypium raimondii HOM05D000115 ORTHO05D005317 3.3e-10 68.2 45 71.1
MD09G1156000 Malus domestica HOM05D000115 ORTHO05D005317 3.3e-10 68.2 45 71.1
QL08p043628 Quercus lobata HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
Sabra14G0107000 Salix brachista HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
GSVIVG01000823001 Vitis vinifera HOM05D000115 ORTHO05D005317 3.3e-10 68.2 38 76.3
CANSAT64G1624 Cannabis sativa HOM05D000115 ORTHO05D005317 4.3e-10 67.8 45 71.1
Lj6g0018112 Lotus japonicus HOM05D000115 ORTHO05D005317 4.3e-10 67.8 45 71.1
Manes.01G128800 Manihot esculenta HOM05D000115 ORTHO05D005317 4.3e-10 67.8 38 76.3
Nitab4.5_0001121g0140 Nicotiana tabacum HOM05D000115 ORTHO05D005317 4.3e-10 67.8 43 65.1
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 4.3e-10 67.8 38 76.3
TWI59G1105 Tripterygium wilfordii HOM05D000115 ORTHO05D005317 4.3e-10 67.8 38 76.3
Atru.chr6.3552 Acer truncatum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Aa31LG1G24560 Aethionema arabicum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
AL4G41420 Arabidopsis lyrata HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
AT2G42810 Arabidopsis thaliana HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
A04p32400 Brassica napus HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
C04p69920 Brassica napus HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
BraA04t18693Z Brassica rapa HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Carub.0004s2525 Capsella rubella HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
CAN.G1481.9 Capsicum annuum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
ClCG09G022290 Citrullus lanatus HOM05D000115 ORTHO05D005317 5.6e-10 67.4 45 68.9
MELO3C014459.2 Cucumis melo HOM05D000115 ORTHO05D005317 5.6e-10 67.4 45 68.9
Thhalv10016582m.g Eutrema salsugineum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Lalb_Chr20g0114141 Lupinus albus HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 76.3
Nn3g20994 Nelumbo nucifera HOM05D000115 ORTHO05D005317 5.6e-10 67.4 42 66.7
Nitab4.5_0002737g0050 Nicotiana tabacum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Peaxi162Scf00154g00714 Petunia axillaris HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Solyc07g055860.4 Solanum lycopersicum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
Sopen07g029230 Solanum pennellii HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
PGSC0003DMG400017340 Solanum tuberosum HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
THA.LOC104803104 Tarenaya hassleriana HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 5.6e-10 67.4 38 73.7
arahy.Tifrunner.gnm1.ann1.I1PD8T Arachis hypogaea HOM05D000115 ORTHO05D005317 7.3e-10 67.0 38 73.7
Duzib187G1471 Durio zibethinus HOM05D000115 ORTHO05D005317 7.3e-10 67.0 45 71.1
Gohir.A07G070900 Gossypium hirsutum HOM05D000115 ORTHO05D005317 7.3e-10 67.0 45 68.9
Gohir.D07G075500 Gossypium hirsutum HOM05D000115 ORTHO05D005317 7.3e-10 67.0 45 68.9
Gorai.001G079700 Gossypium raimondii HOM05D000115 ORTHO05D005317 7.3e-10 67.0 45 68.9
MD17G1142100 Malus domestica HOM05D000115 ORTHO05D005317 7.3e-10 67.0 45 68.9
Mapoly0014s0155 Marchantia polymorpha HOM05D000115 ORTHO05D005317 7.3e-10 67.0 43 67.4
Phvul.006G035200 Phaseolus vulgaris HOM05D000115 ORTHO05D005317 7.3e-10 67.0 38 76.3
Pp3c11_17000 Physcomitrium patens HOM05D000115 ORTHO05D005317 7.3e-10 67.0 43 67.4
Psat5g183840 Pisum sativum HOM05D000115 ORTHO05D005317 7.3e-10 67.0 38 73.7
CARHR137890 Cardamine hirsuta HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 73.7
Ca_14623_v3 Cicer arietinum L. HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 73.7
FAN14G2802 Fragaria x ananassa HOM05D000115 ORTHO05D005317 9.5e-10 66.6 45 71.1
Lalb_Chr10g0106801 Lupinus albus HOM05D000115 ORTHO05D005317 9.5e-10 66.6 43 69.8
Os05g0204900 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D005317 9.5e-10 66.6 45 68.9
PSO541G0742 Papaver somniferum HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 71.1
PSO675G6449 Papaver somniferum HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 71.1
Hund00828 Selenicereus undatus HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 76.3
TPR.G1867 Trifolium pratense HOM05D000115 ORTHO05D005317 9.5e-10 66.6 38 73.7
Ah.01g004800 Amaranthus hybridus HOM05D000115 ORTHO05D005317 1.2e-09 66.2 38 76.3
BcaB06g29264 Brassica carinata HOM05D000115 ORTHO05D005317 1.2e-09 66.2 38 71.1
Lalb_Chr17g0348361 Lupinus albus HOM05D000115 ORTHO05D005317 1.2e-09 66.2 42 69.0
Actinidia32527 Actinidia chinensis HOM05D000115 ORTHO05D005317 1.6e-09 65.9 42 64.3
Duzib264G0129 Durio zibethinus HOM05D000115 ORTHO05D005317 1.6e-09 65.9 45 66.7
Prupe.3G168900 Prunus persica HOM05D000115 ORTHO05D005317 1.6e-09 65.9 45 71.1
Sed0025939 Sechium edule HOM05D000115 ORTHO05D005317 1.6e-09 65.9 37 75.7
Actinidia11189 Actinidia chinensis HOM05D000115 ORTHO05D005317 2.1e-09 65.5 42 61.9
arahy.Tifrunner.gnm1.ann1.8KB6JI Arachis hypogaea HOM05D000115 ORTHO05D005317 2.1e-09 65.5 42 66.7
arahy.Tifrunner.gnm1.ann1.F88V81 Arachis hypogaea HOM05D000115 ORTHO05D005317 2.1e-09 65.5 42 66.7
CSS0012954 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 2.1e-09 65.5 38 76.3
CSS0025244 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 2.1e-09 65.5 38 76.3
Ciclev10015499m.g Citrus clementina HOM05D000115 ORTHO05D005317 2.1e-09 65.5 45 66.7
Sp4g24930 Schrenkiella parvula HOM05D000115 ORTHO05D005317 2.1e-09 65.5 38 71.1
Lsat_1_v5_gn_3_36161 Lactuca sativa HOM05D000115 ORTHO05D005317 2.8e-09 65.1 42 66.7
Lj1A585G39 Lonicera japonica HOM05D000115 ORTHO05D005317 2.8e-09 65.1 38 73.7
ECA246G1880 Erigeron canadensis HOM05D000115 ORTHO05D005317 3.6e-09 64.7 38 71.1
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 3.6e-09 64.7 38 71.1
Medtr2g100160 Medicago truncatula HOM05D000115 ORTHO05D005317 3.6e-09 64.7 38 71.1
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 68.4
C04p03870 Brassica napus HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 68.4
BolC4t22023H Brassica oleracea HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 68.4
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 68.4
MELO3C019702.2 Cucumis melo HOM05D000115 ORTHO05D005317 4.7e-09 64.3 37 73.0
DCAR_013303 Daucus carota HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 68.4
Hma1.2p1_0178F.1_g078130 Hydrangea macrophylla HOM05D000115 ORTHO05D005317 4.7e-09 64.3 38 71.1
Lsat_1_v5_gn_8_32001 Lactuca sativa HOM05D000115 ORTHO05D005317 4.7e-09 64.3 53 56.6
Ah.01g016030 Amaranthus hybridus HOM05D000115 ORTHO05D005317 6.2e-09 63.9 38 73.7
EL10Ac9g21017 Beta vulgaris HOM05D000115 ORTHO05D005317 6.2e-09 63.9 38 73.7
ClCG02G018280 Citrullus lanatus HOM05D000115 ORTHO05D005317 6.2e-09 63.9 51 54.9
Thecc.01G159200 Theobroma cacao HOM05D000115 ORTHO05D005317 6.2e-09 63.9 45 66.7
CsaV3_6G015680 Cucumis sativus L. HOM05D000115 ORTHO05D005317 8.0e-09 63.5 37 70.3
HanXRQChr06g0170821 Helianthus annuus HOM05D000115 ORTHO05D005317 8.0e-09 63.5 38 68.4
SEGI_20856 Sequoiadendron giganteum HOM05D000115 ORTHO05D005317 8.0e-09 63.5 38 68.4
Cfa022004 Carpinus fangiana HOM05D000115 ORTHO05D005317 1.0e-08 63.2 38 71.1
Migut.M00220 Erythranthe guttata HOM05D000115 ORTHO05D005317 1.0e-08 63.2 38 71.1
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 1.0e-08 63.2 43 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3245 Anthoceros agrestis HOM05D000115 ORTHO05D005317 1.8e-08 62.4 41 68.3
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 2.3e-08 62.0 38 71.1
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 4.0e-08 61.2 38 68.4
SMO301G0033 Selaginella moellendorffii HOM05D000115 ORTHO05D005317 3.4e-07 58.2 44 54.5
Cre07.g326800 Chlamydomonas reinhardtii HOM05D000115 ORTHO05D005317 4.4e-07 57.8 38 60.5
HanXRQChr15g0484441 Helianthus annuus HOM05D000115 ORTHO05D005317 7.5e-07 57.0 38 65.8
SHI07878 Sapria himalayana HOM05D000360 ORTHO05D000234 2.9e-06 55.1 36 77.8
SHI24462 Sapria himalayana HOM05D000115 ORTHO05D005317 4.9e-06 54.3 25 96.0
arahy.Tifrunner.gnm1.ann1.LX1LZF Arachis hypogaea HOM05D000115 ORTHO05D005317 6.4e-06 53.9 38 65.8
MD12G1049700 Malus domestica HOM05D000115 ORTHO05D005317 6.4e-06 53.9 37 67.6


User provided reference genes

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