Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 8.7e-108 393.7 201 100.0
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 1.6e-61 240.0 148 89.2
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 1.0e-47 194.1 145 68.3
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 1.0e-47 194.1 145 68.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.0e-47 194.1 145 66.9
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 3.9e-47 192.2 145 66.9
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 6.6e-47 191.4 145 67.6
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 8.6e-47 191.0 145 66.9
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 1.1e-46 190.7 145 67.6
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 1.5e-46 190.3 145 67.6
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 2.5e-46 189.5 144 66.7
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 3.3e-46 189.1 144 67.4
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.3e-46 189.1 145 66.9
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 3.3e-46 189.1 144 67.4
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 4.3e-46 188.7 145 65.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 4.3e-46 188.7 145 67.6
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 5.6e-46 188.3 145 64.8
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 7.3e-46 188.0 145 66.2
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 9.5e-46 187.6 145 65.5
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 1.2e-45 187.2 145 65.5
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.2e-45 187.2 145 66.2
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.2e-45 187.2 145 66.2
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 1.6e-45 186.8 145 66.9
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 2.1e-45 186.4 145 67.6
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 2.1e-45 186.4 145 67.6
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 2.1e-45 186.4 145 66.9
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 2.8e-45 186.0 145 66.2
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 2.8e-45 186.0 145 66.2
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 4.7e-45 185.3 140 68.6
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.7e-45 185.3 145 66.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.7e-45 185.3 145 66.2
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 4.7e-45 185.3 145 68.3
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 6.2e-45 184.9 145 67.6
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 8.0e-45 184.5 145 64.8
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 8.0e-45 184.5 145 65.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.4e-44 183.7 145 63.4
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.4e-44 183.7 145 66.2
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 1.4e-44 183.7 139 66.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.8e-44 183.3 147 65.3
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 1.8e-44 183.3 145 65.5
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 2.3e-44 183.0 145 64.1
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 2.3e-44 183.0 151 63.6
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.3e-44 183.0 145 66.2
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.3e-44 183.0 145 66.2
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.3e-44 183.0 151 63.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 5.2e-44 181.8 145 63.4
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 5.2e-44 181.8 145 65.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 6.8e-44 181.4 146 65.8
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 6.8e-44 181.4 147 63.3
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 6.8e-44 181.4 145 66.2
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 6.8e-44 181.4 145 64.1
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 8.9e-44 181.0 145 66.2
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 8.9e-44 181.0 147 63.9
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-43 180.6 151 63.6
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.5e-43 180.3 145 64.8
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 2.0e-43 179.9 145 64.1
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.6e-43 179.5 150 60.7
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.6e-43 179.5 150 60.7
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 2.6e-43 179.5 145 64.8
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 3.4e-43 179.1 146 65.1
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.5e-43 177.9 151 62.3
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 1.7e-42 176.8 146 65.1
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 2.2e-42 176.4 144 62.5
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 2.2e-42 176.4 145 62.1
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 2.2e-42 176.4 144 61.1
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.2e-42 176.4 145 64.1
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 3.7e-42 175.6 145 63.4
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.9e-42 175.3 145 62.8
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.3e-42 174.5 145 62.1
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 1.4e-41 173.7 144 60.4
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 1.9e-41 173.3 146 63.0
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 3.2e-41 172.6 145 62.8
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 3.2e-41 172.6 145 62.1
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 4.1e-41 172.2 137 64.2
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 7.0e-41 171.4 145 61.4
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 9.2e-41 171.0 145 60.7
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 1.2e-40 170.6 145 58.6
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.1e-40 169.9 145 59.3
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 3.5e-40 169.1 145 62.8
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 4.6e-40 168.7 145 62.1
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.6e-40 168.7 145 59.3
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.6e-40 168.7 149 61.1
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 6.0e-40 168.3 126 66.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 1.0e-39 167.5 145 62.1
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 1.0e-39 167.5 145 60.7
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.0e-39 167.5 145 58.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.3e-39 167.2 134 67.2
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.7e-39 166.8 144 60.4
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.7e-39 166.8 144 60.4
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.7e-39 166.8 144 59.0
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 2.3e-39 166.4 145 58.6
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 3.0e-39 166.0 145 58.6
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 3.0e-39 166.0 145 60.0
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 3.9e-39 165.6 145 58.6
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 3.9e-39 165.6 145 58.6
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 5.1e-39 165.2 145 57.9
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 5.1e-39 165.2 145 59.3
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.1e-39 165.2 145 57.2
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 6.6e-39 164.9 145 57.2
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 1.5e-38 163.7 145 57.9
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 2.5e-38 162.9 145 57.9
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 2.5e-38 162.9 145 57.9
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 3.3e-38 162.5 144 62.5
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 3.3e-38 162.5 145 61.4
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 5.6e-38 161.8 145 57.2
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 7.3e-38 161.4 145 57.2
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 3.6e-37 159.1 140 60.7
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 1.4e-36 157.1 141 61.0
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-33 147.5 131 60.3
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.6e-29 133.7 105 67.6
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.8e-26 122.5 147 46.3
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 4.9e-26 122.1 143 47.6
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 7.8e-24 114.8 146 45.2
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 2.5e-22 109.8 126 46.0
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 3.4e-19 99.4 58 89.7
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.2e-16 90.9 112 45.5
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.3e-14 82.8 94 47.9
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.8e-13 79.7 63 58.7
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.1e-12 76.3 63 57.1
SHI04733 Sapria himalayana HOM05D019759 ORTHO05D004036 2.0e-11 73.6 37 81.1
SHI27365 Sapria himalayana HOM05D019759 ORTHO05D004036 9.9e-11 71.2 46 73.9
SHI26790 Sapria himalayana HOM05D019759 ORTHO05D004036 1.3e-10 70.9 42 73.8
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.7e-10 70.5 111 37.8
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 1.2e-08 64.3 65 50.8
SHI15079 Sapria himalayana HOM05D019759 ORTHO05D004036 5.1e-07 58.9 36 72.2
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.5e-06 57.4 97 38.1
SHI34435 Sapria himalayana HOM05D019759 ORTHO05D004036 1.5e-06 57.4 40 70.0
SHI23531 Sapria himalayana HOM05D000006 ORTHO05D000001 2.5e-06 56.6 36 69.4


User provided reference genes

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