Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 1.7e-199 699.1 351 100.0
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.5e-94 349.7 343 55.4
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.3e-82 310.8 314 54.5
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 6.5e-82 308.5 344 50.6
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.2e-80 304.3 314 53.2
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.4e-76 290.8 345 48.4
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-76 290.4 345 48.4
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 4.5e-75 285.8 339 49.6
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.6e-75 285.0 345 46.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 6.5e-74 282.0 345 47.0
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.9e-73 280.4 344 46.2
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.5e-73 280.0 344 47.4
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.2e-73 279.6 343 47.8
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 5.5e-73 278.9 347 48.1
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 9.3e-73 278.1 343 46.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.6e-72 277.3 344 46.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.9e-72 275.0 346 45.4
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 8.7e-71 271.6 344 45.6
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.1e-70 271.2 346 45.1
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.5e-70 270.8 343 46.1
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.9e-70 270.4 346 44.8
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.5e-70 270.0 341 48.1
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.5e-70 270.0 346 45.4
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 5.7e-70 268.9 341 47.8
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.3e-69 267.7 367 44.7
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.3e-69 267.7 341 47.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.8e-69 266.5 343 46.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 3.7e-69 266.2 346 45.1
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 3.7e-69 266.2 345 45.5
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.1e-68 264.6 344 46.5
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.4e-68 264.2 349 44.4
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.4e-68 264.2 343 45.5
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.8e-68 263.8 349 44.1
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.8e-68 263.8 345 44.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 6.9e-68 261.9 341 46.6
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.2e-67 261.2 351 43.9
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 2.0e-67 260.4 337 44.8
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.2e-66 256.9 344 43.3
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.8e-66 256.1 367 43.1
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 2.5e-65 253.4 343 44.6
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 4.2e-65 252.7 347 44.1
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 5.5e-65 252.3 342 44.2
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.6e-64 250.8 351 42.7
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.6e-64 249.6 340 41.8
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 4.6e-64 249.2 344 44.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 1.0e-63 248.1 343 42.6
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.4e-63 247.7 344 43.6
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 2.3e-63 246.9 345 42.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 2.3e-63 246.9 346 43.6
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.3e-63 246.9 344 43.9
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 3.9e-63 246.1 346 42.2
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 2.0e-62 243.8 345 41.7
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.5e-62 243.4 325 44.0
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.5e-62 243.4 357 40.9
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 4.3e-62 242.7 344 43.9
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 7.4e-62 241.9 345 43.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.7e-61 240.7 315 46.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-61 240.4 341 43.1
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.8e-61 239.2 348 42.8
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 6.3e-61 238.8 346 43.1
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 5.3e-60 235.7 363 39.9
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.9e-60 235.3 339 43.7
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.1e-60 235.0 346 41.9
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 9.1e-60 235.0 394 38.1
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.2e-59 234.6 346 42.5
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.2e-59 234.6 347 40.1
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.6e-59 233.4 338 42.6
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 4.5e-59 232.6 346 43.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.3e-58 231.1 347 41.8
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.7e-58 230.7 341 41.1
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.9e-58 229.9 352 40.1
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 6.5e-58 228.8 343 40.2
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-57 227.3 384 38.8
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.4e-57 224.9 333 43.5
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.1e-56 223.8 296 48.0
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 3.6e-56 223.0 345 40.9
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 6.1e-56 222.2 347 39.8
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.8e-55 220.7 343 39.7
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.0e-55 219.9 346 40.8
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 3.9e-55 219.5 346 41.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 6.7e-55 218.8 356 39.9
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.3e-54 216.5 339 40.4
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 4.4e-54 216.1 347 41.2
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 5.7e-54 215.7 345 40.6
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.2e-53 213.8 372 36.6
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.2e-53 213.8 372 36.6
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 2.8e-53 213.4 423 35.2
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 3.7e-53 213.0 341 39.9
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.7e-53 213.0 255 46.7
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.4e-52 210.3 346 39.9
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 3.1e-52 209.9 435 33.8
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 5.3e-52 209.1 354 41.0
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 7.0e-52 208.8 345 39.1
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 7.0e-52 208.8 271 45.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.5e-51 207.6 345 39.1
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.5e-51 207.6 343 39.4
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.0e-51 207.2 345 39.1
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.5e-51 206.5 343 38.8
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.5e-51 206.5 345 39.1
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.5e-51 206.5 345 39.1
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 4.5e-51 206.1 296 41.2
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 4.5e-51 206.1 330 40.6
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 4.5e-51 206.1 354 40.7
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.9e-51 205.7 345 38.8
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.7e-51 205.3 345 38.8
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.7e-50 204.1 340 40.9
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 2.9e-50 203.4 351 39.0
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 2.9e-50 203.4 351 38.5
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 6.5e-50 202.2 344 38.4
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 6.5e-50 202.2 347 39.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 2.5e-49 200.3 442 33.3
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 3.2e-49 199.9 343 39.1
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.2e-49 199.5 352 38.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 9.4e-49 198.4 351 37.6
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 2.1e-48 197.2 352 37.8
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.6e-48 196.4 354 37.3
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.7e-48 196.1 305 42.0
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 8.0e-48 195.3 342 38.0
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 8.0e-48 195.3 342 38.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-47 194.9 342 38.0
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 6.7e-47 192.2 351 38.5
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 8.8e-47 191.8 343 37.9
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.5e-46 191.0 343 37.9
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 3.3e-46 189.9 354 36.4
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 3.3e-46 189.9 346 36.4
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 4.1e-44 183.0 343 35.9
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 9.1e-44 181.8 343 36.2
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.2e-43 181.4 343 35.3
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 2.0e-43 180.6 342 36.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.5e-43 179.9 188 51.6
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 5.9e-43 179.1 376 35.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 7.7e-43 178.7 352 36.4
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.7e-42 177.6 347 35.7
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.5e-41 173.7 348 35.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.6e-40 169.9 236 43.6
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.4e-39 167.9 261 38.3
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 4.4e-38 162.9 338 35.2
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.7e-37 161.0 340 35.0
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.0e-35 154.1 338 32.8
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.0e-35 154.1 360 34.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 4.5e-35 152.9 348 34.8
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.0e-34 151.8 171 45.6
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.1e-33 148.3 165 49.1
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.1e-33 148.3 384 31.2
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.9e-33 147.5 188 40.4
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 5.5e-33 146.0 327 31.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.2e-33 145.6 296 37.2
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-32 144.8 348 33.3
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.2e-32 144.8 352 31.8
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.7e-32 142.9 346 31.5
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.7e-32 142.9 346 31.5
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 8.0e-32 142.1 341 33.4
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-31 141.7 324 34.9
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 3.0e-31 140.2 283 35.3
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.7e-26 124.4 350 30.9
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.3e-26 124.0 150 51.3
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 2.9e-26 123.6 215 38.6
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 3.6e-24 116.7 359 29.2
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.3e-21 108.2 178 42.1
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.1e-20 105.1 114 50.9
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.1e-20 105.1 308 29.2
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 1.7e-18 97.8 222 33.3
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 4.3e-17 93.2 99 45.5
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-15 88.2 207 33.3
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.7e-13 81.3 145 32.4
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 2.0e-11 74.3 373 23.3
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 9.5e-09 65.5 140 34.3
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 3.1e-07 60.5 403 22.1
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 4.0e-07 60.1 91 41.8
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 6.8e-07 59.3 67 46.3


User provided reference genes

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