Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.6e-67 259.2 128 100.0
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 8.7e-45 183.7 104 83.7
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 7.4e-44 180.6 104 83.7
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 3.7e-43 178.3 104 79.8
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 3.7e-43 178.3 105 80.0
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 4.8e-43 177.9 104 79.8
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.2e-43 177.2 104 80.8
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.2e-43 177.2 104 80.8
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 8.2e-43 177.2 104 80.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.1e-42 176.8 104 81.7
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 2.4e-42 175.6 104 81.7
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 2.4e-42 175.6 104 77.9
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 2.4e-42 175.6 104 79.8
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 4.1e-42 174.9 104 79.8
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 5.3e-42 174.5 104 78.8
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 6.9e-42 174.1 110 75.5
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 6.9e-42 174.1 104 79.8
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.2e-41 173.3 104 78.8
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.2e-41 173.3 104 78.8
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.5e-41 172.9 104 78.8
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.0e-41 172.6 104 79.8
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 4.5e-41 171.4 104 77.9
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 5.9e-41 171.0 105 79.0
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 5.9e-41 171.0 104 76.9
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 5.9e-41 171.0 104 77.9
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 7.7e-41 170.6 104 78.8
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 7.7e-41 170.6 104 76.9
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 7.7e-41 170.6 104 76.0
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 1.3e-40 169.9 110 77.3
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 1.7e-40 169.5 105 77.1
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 1.7e-40 169.5 103 78.6
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.7e-40 169.5 105 79.0
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 1.7e-40 169.5 105 79.0
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 2.2e-40 169.1 105 79.0
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 2.2e-40 169.1 104 77.9
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 2.9e-40 168.7 104 77.9
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 2.9e-40 168.7 104 78.8
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 5.0e-40 167.9 104 78.8
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 5.0e-40 167.9 104 76.9
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 6.5e-40 167.5 104 77.9
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.5e-40 167.5 104 75.0
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 8.5e-40 167.2 104 76.0
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 8.5e-40 167.2 105 77.1
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.5e-40 167.2 104 75.0
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 8.5e-40 167.2 105 78.1
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 8.5e-40 167.2 108 76.9
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 8.5e-40 167.2 105 79.0
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 8.5e-40 167.2 108 75.0
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 1.1e-39 166.8 104 75.0
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 1.4e-39 166.4 104 76.0
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 1.9e-39 166.0 104 73.1
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 1.9e-39 166.0 104 73.1
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 2.5e-39 165.6 104 77.9
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 2.5e-39 165.6 110 74.5
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 2.5e-39 165.6 104 77.9
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 3.2e-39 165.2 104 75.0
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 4.2e-39 164.9 105 76.2
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 4.2e-39 164.9 114 71.1
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 4.2e-39 164.9 105 76.2
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 5.5e-39 164.5 111 73.0
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 7.2e-39 164.1 105 76.2
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 7.2e-39 164.1 115 71.3
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 7.2e-39 164.1 104 73.1
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 7.2e-39 164.1 104 76.0
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 9.4e-39 163.7 107 76.6
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 1.2e-38 163.3 110 71.8
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.6e-38 162.9 100 76.0
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 1.6e-38 162.9 106 77.4
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 2.1e-38 162.5 106 75.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 2.1e-38 162.5 105 76.2
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 4.6e-38 161.4 106 74.5
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 4.6e-38 161.4 104 74.0
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 4.6e-38 161.4 106 75.5
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.9e-38 160.6 106 75.5
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.9e-38 160.6 106 75.5
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 7.9e-38 160.6 106 76.4
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 1.0e-37 160.2 97 77.3
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.4e-37 159.8 105 76.2
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.8e-37 159.5 105 75.2
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 1.8e-37 159.5 105 75.2
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.8e-37 159.5 105 74.3
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 2.3e-37 159.1 105 74.3
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 3.9e-37 158.3 106 73.6
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 5.1e-37 157.9 96 78.1
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 5.1e-37 157.9 105 71.4
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 5.1e-37 157.9 105 74.3
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 5.1e-37 157.9 106 71.7
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 5.1e-37 157.9 106 75.5
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 6.7e-37 157.5 105 73.3
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 6.7e-37 157.5 104 73.1
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 6.7e-37 157.5 105 74.3
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 8.8e-37 157.1 107 72.9
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 8.8e-37 157.1 110 71.8
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 8.8e-37 157.1 110 71.8
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 1.5e-36 156.4 105 73.3
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 1.5e-36 156.4 105 73.3
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 1.5e-36 156.4 105 73.3
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 2.0e-36 156.0 105 71.4
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 2.0e-36 156.0 108 73.1
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 73.3
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 73.3
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 73.3
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 72.4
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 73.3
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 2.5e-36 155.6 107 72.0
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.5e-36 155.6 105 74.3
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 3.3e-36 155.2 106 70.8
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 3.3e-36 155.2 101 74.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.3e-36 155.2 104 72.1
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 4.3e-36 154.8 105 73.3
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 4.3e-36 154.8 105 73.3
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 4.3e-36 154.8 106 71.7
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 4.3e-36 154.8 106 71.7
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 72.4
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 72.4
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 72.4
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 73.3
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 72.4
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 5.7e-36 154.5 105 72.4
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 7.4e-36 154.1 100 72.0
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 7.4e-36 154.1 107 72.0
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 7.4e-36 154.1 106 71.7
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 7.4e-36 154.1 107 72.0
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 7.4e-36 154.1 105 72.4
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 7.4e-36 154.1 106 71.7
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 9.7e-36 153.7 106 71.7
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.3e-35 153.3 104 71.2
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.7e-35 152.9 104 69.2
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 2.2e-35 152.5 114 70.2
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 2.2e-35 152.5 118 66.9
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 2.8e-35 152.1 105 72.4
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 2.8e-35 152.1 108 70.4
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 2.8e-35 152.1 108 70.4
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 4.8e-35 151.4 105 71.4
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.8e-34 149.4 106 69.8
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.8e-34 149.4 106 69.8
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 1.8e-34 149.4 106 69.8
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.4e-34 149.1 104 69.2
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 3.4e-33 145.2 105 69.5
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 2.2e-32 142.5 105 67.6
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 7.7e-25 117.5 81 71.6
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 5.0e-24 114.8 69 78.3
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 5.0e-24 114.8 69 78.3
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 2.0e-20 102.8 82 67.1
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 7.4e-20 100.9 72 68.1
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 8.2e-19 97.4 104 57.7
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 4.1e-18 95.1 52 84.6
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.0e-16 90.5 56 76.8
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 2.9e-16 89.0 98 51.0
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 8.0e-14 80.9 123 38.2
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 1.0e-13 80.5 105 50.5
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 3.5e-09 65.5 77 50.6
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 3.6e-06 55.5 28 96.4


User provided reference genes

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