Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.3e-149 533.1 293 100.0
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.9e-53 211.8 254 50.4
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.6e-49 199.1 255 49.8
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.9e-48 196.1 272 45.2
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.4e-45 187.6 255 45.1
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.8e-45 187.2 258 45.0
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 9.0e-45 184.9 254 45.7
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.2e-44 184.5 260 45.0
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.0e-44 183.7 247 44.5
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 2.0e-44 183.7 255 43.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 7.1e-42 175.3 253 45.8
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 9.3e-42 174.9 255 42.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.8e-40 170.6 259 42.5
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 6.7e-40 168.7 259 42.5
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 3.3e-39 166.4 251 42.2
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.6e-39 164.9 251 41.0
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 9.6e-39 164.9 252 43.3
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 9.6e-39 164.9 249 40.2
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.1e-37 161.4 243 42.8
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.8e-37 160.6 261 40.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.6e-36 156.8 257 43.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 3.4e-36 156.4 311 35.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 5.8e-36 155.6 231 42.4
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 7.6e-36 155.2 249 41.0
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.4e-35 151.8 312 36.2
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.4e-34 151.0 182 46.7
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.4e-34 151.0 312 36.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.4e-34 151.0 312 35.9
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-34 150.2 312 35.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-33 147.9 310 35.8
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.6e-33 147.5 258 39.9
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 3.5e-33 146.4 271 37.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.6e-33 146.0 235 40.4
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.3e-32 143.7 259 40.2
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.0e-32 143.3 256 41.0
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.1e-31 141.4 250 38.4
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.9e-31 140.6 261 34.5
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 7.4e-31 138.7 268 36.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.3e-30 137.9 288 35.4
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 4.8e-30 136.0 190 43.2
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.8e-30 136.0 285 32.6
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 2.4e-29 133.7 258 34.5
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 3.1e-29 133.3 256 35.5
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 4.0e-29 132.9 238 37.0
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 6.9e-29 132.1 276 34.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.2e-28 131.3 279 35.1
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.0e-28 130.6 229 34.5
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.3e-27 127.9 257 33.9
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.3e-27 127.9 261 34.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.3e-27 127.9 215 39.5
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.2e-27 127.1 301 33.2
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 3.8e-27 126.3 260 33.8
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 5.0e-27 125.9 241 39.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 8.4e-27 125.2 300 32.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 8.4e-27 125.2 253 32.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.4e-26 124.4 280 32.5
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.9e-26 124.0 281 34.2
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.5e-26 123.6 234 36.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 3.2e-26 123.2 254 33.5
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 3.2e-26 123.2 245 34.3
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-26 122.9 251 34.3
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 4.2e-26 122.9 293 31.7
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 4.2e-26 122.9 293 31.7
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.6e-25 120.9 271 32.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.6e-25 120.9 274 31.8
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.7e-25 120.2 150 46.7
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.7e-25 120.2 257 33.9
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 4.6e-25 119.4 238 35.3
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 4.6e-25 119.4 134 51.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 7.9e-25 118.6 273 34.1
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.0e-24 118.2 279 32.6
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.8e-24 117.5 309 30.7
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.8e-24 117.5 224 36.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.0e-24 116.7 300 32.0
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.0e-24 116.7 241 33.6
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 5.1e-24 115.9 277 34.3
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 6.7e-24 115.5 288 32.6
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 8.7e-24 115.2 288 32.6
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 8.7e-24 115.2 265 34.3
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.9e-23 114.0 257 33.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.5e-23 113.6 284 31.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 3.3e-23 113.2 122 47.5
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 5.7e-23 112.5 194 39.7
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 7.4e-23 112.1 117 52.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.6e-22 110.9 236 34.7
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.2e-22 110.5 238 36.1
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.8e-22 110.2 217 32.7
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.1e-21 106.3 115 52.2
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 6.9e-21 105.5 116 47.4
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.5e-20 104.4 102 55.9
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.0e-19 101.7 277 30.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.2e-19 100.5 239 34.7
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-18 98.2 117 47.0
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 3.2e-18 96.7 181 37.6
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.6e-17 94.4 212 31.6
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.1e-17 94.0 115 46.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 4.6e-17 92.8 118 49.2
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.9e-17 92.0 75 62.7
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.0e-16 91.7 117 48.7
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.0e-16 91.7 90 47.8
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.3e-15 86.7 117 44.4
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.3e-15 86.7 218 32.1
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.2e-14 84.0 241 30.7
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.8e-14 83.6 240 32.5
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.8e-14 83.6 234 31.2
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.4e-13 81.3 80 56.2
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 5.9e-12 75.9 249 27.7
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 5.9e-12 75.9 214 30.8
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 7.7e-12 75.5 116 37.9
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 5.0e-11 72.8 258 26.4
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.2e-09 68.2 116 33.6
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-09 67.8 106 40.6
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 3.9e-08 63.2 68 50.0
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 8.8e-08 62.0 267 28.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 8.8e-08 62.0 102 37.3
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.0e-07 60.8 55 58.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.3e-07 60.1 51 56.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.4e-07 59.7 111 36.9
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.7e-07 59.3 110 36.4
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 7.4e-07 58.9 97 33.0
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 9.7e-07 58.5 91 39.6


User provided reference genes

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