Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.8e-262 908.7 457 100.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.5e-174 615.9 454 70.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.8e-169 599.7 453 69.1
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.1e-169 598.6 454 68.9
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 9.1e-169 597.4 451 68.1
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.6e-168 595.9 451 68.7
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-168 595.9 451 68.7
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.4e-168 595.5 445 69.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.7e-168 594.3 451 68.5
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.9e-167 592.4 439 70.2
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.8e-167 592.0 451 68.3
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.0e-167 591.7 451 68.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.9e-166 589.7 456 67.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 4.2e-166 588.6 450 68.4
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 9.4e-166 587.4 441 69.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.2e-165 587.0 445 69.2
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.9e-165 584.3 454 67.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.3e-164 582.8 450 67.6
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.0e-164 582.4 451 67.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 3.0e-164 582.4 452 67.9
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.0e-164 582.4 457 67.2
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 3.9e-164 582.0 436 69.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.9e-164 582.0 439 68.6
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.1e-163 580.5 451 66.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.1e-163 580.5 455 66.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 5.7e-163 578.2 451 66.3
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.7e-163 577.4 458 65.7
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.3e-162 577.0 461 65.7
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-162 576.2 468 65.6
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.8e-162 575.9 455 67.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.8e-162 575.9 450 66.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.8e-162 575.1 468 65.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.1e-161 573.9 451 65.9
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.8e-161 573.2 443 67.5
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 5.3e-161 571.6 479 63.9
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.9e-161 571.2 468 65.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 6.9e-161 571.2 448 66.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-160 570.5 450 66.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 5.9e-160 568.2 457 65.0
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.2e-159 566.2 461 65.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.2e-159 566.2 457 64.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 6.5e-159 564.7 452 65.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 6.5e-159 564.7 475 63.2
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.9e-158 563.1 457 63.7
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.9e-158 563.1 453 64.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 4.2e-158 562.0 462 63.9
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 7.2e-158 561.2 461 64.6
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 9.4e-158 560.8 453 64.2
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.2e-157 560.5 460 64.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.1e-157 559.7 443 65.5
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.7e-157 559.3 458 65.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.6e-157 558.9 458 63.5
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 4.7e-157 558.5 461 64.0
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 4.7e-157 558.5 461 64.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.9e-157 557.8 460 64.1
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.8e-156 556.6 462 64.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.3e-156 556.2 454 65.6
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 3.0e-156 555.8 458 64.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.0e-156 555.8 461 64.2
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.2e-156 555.1 446 66.1
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.2e-156 555.1 455 64.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.1e-155 553.9 454 64.3
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-155 553.9 446 65.9
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.3e-155 552.4 458 65.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.7e-154 550.1 457 62.8
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-154 549.7 458 64.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-154 549.7 458 64.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.2e-154 549.7 446 65.2
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.8e-154 549.3 453 62.9
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.7e-154 548.9 446 65.5
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.7e-154 548.9 444 65.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.2e-154 547.7 457 63.7
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.1e-153 547.4 486 62.8
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.1e-153 547.4 457 62.8
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.1e-153 547.4 435 66.7
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.4e-153 547.0 461 63.3
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 4.5e-152 542.0 491 61.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.9e-152 541.6 458 64.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.3e-151 540.4 441 63.9
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.7e-151 540.0 455 64.6
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.0e-151 538.5 442 63.1
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.5e-151 538.1 462 61.7
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.5e-150 536.2 446 62.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.6e-149 533.5 454 62.3
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.1e-149 533.1 454 61.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.7e-149 532.7 489 59.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.6e-149 532.3 448 63.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.0e-149 531.2 460 61.7
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.3e-146 523.9 397 70.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.4e-145 519.6 458 61.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.1e-145 518.8 464 61.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.4e-140 503.8 479 57.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.0e-136 490.0 450 60.0
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.0e-135 487.6 452 58.6
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-132 477.6 454 55.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.4e-131 472.2 327 74.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 9.8e-131 471.1 452 56.9
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.8e-130 469.5 383 66.3
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.5e-128 462.2 439 55.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.7e-127 460.3 441 55.6
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 6.6e-127 458.4 437 58.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 3.3e-126 456.1 404 62.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 8.9e-124 448.0 456 54.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.2e-122 443.4 457 53.4
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.4e-121 440.7 454 54.6
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.8e-121 440.3 482 51.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.6e-120 437.2 450 52.9
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.6e-119 431.4 475 52.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.8e-117 426.4 354 60.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.3e-116 423.3 280 74.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.3e-116 423.3 396 58.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.0e-112 410.2 491 47.9
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.6e-109 400.6 456 49.8
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.5e-104 382.9 453 48.3
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 6.0e-104 382.1 349 61.0
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 5.1e-103 379.0 362 59.9
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.5e-102 377.5 479 47.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 7.1e-97 358.6 336 61.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 7.8e-96 355.1 431 49.0
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 4.3e-94 349.4 329 62.0
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.6e-93 347.4 332 59.9
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.1e-93 347.1 332 59.3
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.0e-92 342.8 332 59.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 2.2e-90 337.0 398 47.5
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-82 309.7 428 47.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 9.6e-78 295.0 366 52.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.4e-73 281.2 236 61.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.4e-70 268.9 191 66.0
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-66 256.9 137 83.2
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.9e-65 254.2 162 72.2
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 5.9e-59 232.6 407 37.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.6e-56 223.4 120 83.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.1e-56 222.6 278 51.1
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.8e-55 221.1 123 81.3
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.7e-53 214.5 120 80.8
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.6e-51 207.2 315 39.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.8e-50 203.4 288 46.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.5e-43 181.4 342 38.0
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-41 175.3 194 56.2
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 4.8e-37 159.8 144 56.9
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.4e-36 157.5 105 68.6
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.7e-35 152.5 106 67.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-33 148.3 185 48.1
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.1e-28 132.1 343 30.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 9.4e-25 119.0 68 80.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.7e-18 98.2 119 52.1
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.5e-17 94.4 58 69.0
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 2.0e-14 84.7 65 64.6
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 7.0e-12 76.3 60 65.0
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 5.0e-10 70.1 38 84.2
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.3e-09 67.0 45 71.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.0e-07 62.4 33 84.8
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-07 61.6 54 51.9


User provided reference genes

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