Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 5.9e-180 634.0 311 100.0
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 4.0e-128 461.8 306 75.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.7e-126 456.4 307 74.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-126 456.4 309 74.4
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 5.5e-125 451.4 314 72.3
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.1e-124 449.5 311 72.3
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.8e-123 446.4 309 72.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.1e-123 444.9 313 71.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-122 443.7 307 71.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.5e-122 443.4 309 70.6
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.9e-122 443.0 309 71.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 3.3e-122 442.2 308 71.1
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 4.3e-122 441.8 314 70.1
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.3e-122 441.8 309 71.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.8e-121 439.1 309 70.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 8.2e-121 437.6 313 70.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 8.2e-121 437.6 308 71.1
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 8.2e-121 437.6 309 69.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.4e-120 436.8 309 72.2
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.8e-120 436.4 310 71.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.4e-120 436.0 310 72.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-120 436.0 308 69.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 4.0e-120 435.3 309 68.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 5.3e-120 434.9 315 70.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 9.0e-120 434.1 316 69.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 7.6e-119 431.0 309 68.3
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.7e-118 429.9 310 71.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.9e-118 429.1 310 69.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.9e-118 428.3 310 69.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.9e-118 428.3 335 66.6
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.5e-118 427.9 313 68.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.4e-118 427.6 306 69.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 8.4e-118 427.6 337 64.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.1e-117 427.2 310 71.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 9.3e-117 424.1 310 68.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 9.3e-117 424.1 309 70.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.1e-116 422.9 308 69.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.7e-116 422.5 314 66.6
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.7e-116 422.5 309 69.9
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.5e-116 422.2 310 68.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.3e-115 420.2 310 67.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 6.7e-115 417.9 309 68.6
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 8.7e-115 417.5 309 67.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 8.7e-115 417.5 309 68.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 8.7e-115 417.5 306 68.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.7e-115 417.5 311 68.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.7e-115 417.5 311 68.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.1e-114 417.2 312 68.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.5e-114 416.8 315 67.3
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-114 416.8 307 67.4
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.9e-114 416.4 322 66.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.9e-114 416.4 307 68.1
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.5e-114 416.0 309 67.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.3e-114 415.6 313 67.7
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 5.7e-114 414.8 310 66.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.2e-113 412.9 310 67.1
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.7e-113 412.1 309 66.0
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.7e-113 412.1 310 66.5
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.8e-112 409.8 308 65.9
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 3.1e-112 409.1 310 66.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.3e-112 408.3 310 67.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 6.9e-112 407.9 310 66.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 6.9e-112 407.9 310 66.1
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 6.9e-112 407.9 309 67.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.2e-111 407.1 308 68.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-111 407.1 309 68.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.5e-111 406.8 307 65.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.0e-111 406.4 306 66.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.6e-111 406.0 307 66.8
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.9e-111 404.8 306 65.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 7.7e-111 404.4 306 65.7
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.0e-110 404.1 309 68.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-110 403.7 306 65.4
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.2e-110 402.9 311 66.6
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.9e-110 402.5 306 65.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.9e-110 402.5 308 65.6
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.0e-110 401.7 246 77.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.0e-110 401.7 309 65.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 6.5e-110 401.4 317 65.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 6.5e-110 401.4 312 65.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 7.9e-108 394.4 311 64.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.3e-107 392.9 291 69.1
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 3.0e-107 392.5 309 65.4
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.0e-106 389.8 280 70.4
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.5e-106 389.4 311 65.0
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.8e-105 385.2 280 70.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-104 384.0 308 63.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-104 383.6 313 65.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.9e-104 381.3 310 63.5
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.2e-103 380.6 309 63.4
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-103 380.2 306 63.4
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.0e-103 379.8 310 63.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.5e-103 378.6 309 64.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-102 377.1 291 66.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.2e-102 376.3 311 63.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.9e-102 375.9 317 62.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-101 374.0 279 68.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.9e-101 373.2 311 62.7
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.5e-101 372.9 312 61.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 3.3e-98 362.5 311 63.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.2e-97 359.8 310 59.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 6.3e-97 358.2 280 66.4
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.8e-96 356.7 314 60.5
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.8e-96 356.7 280 67.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.3e-96 355.1 260 70.0
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 7.0e-96 354.8 283 65.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 7.7e-95 351.3 215 76.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 8.5e-94 347.8 315 60.0
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 5.5e-93 345.1 291 62.9
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.4e-91 340.5 312 56.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.8e-91 340.1 279 64.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.0e-91 339.3 279 64.5
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 5.2e-91 338.6 219 74.4
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.7e-89 333.6 297 57.6
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.7e-89 333.6 258 65.9
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.5e-87 325.9 236 67.8
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 6.5e-86 321.6 277 62.5
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.5e-85 319.7 329 52.0
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.1e-84 315.1 257 63.0
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.2e-82 310.8 269 59.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.7e-79 299.7 260 63.5
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 5.5e-77 292.0 236 64.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.4e-74 282.7 223 67.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.1e-72 276.2 233 59.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.1e-68 263.5 233 55.8
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.1e-68 261.9 280 53.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 3.0e-67 259.6 268 50.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.2e-66 257.7 155 76.8
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.8e-64 250.4 174 66.1
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.2e-64 249.6 267 53.6
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.6e-63 245.7 222 59.9
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.9e-63 245.4 203 62.6
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.9e-62 242.7 186 68.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.3e-61 239.2 212 61.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.3e-61 239.2 212 61.3
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.3e-54 217.6 230 49.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.3e-54 217.6 223 56.1
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.9e-54 216.1 230 54.8
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.5e-53 214.2 140 73.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.9e-53 213.8 186 62.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.1e-48 198.0 223 52.0
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.2e-48 196.4 136 70.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 9.2e-48 194.9 249 44.2
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 6.6e-46 188.7 180 61.7
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.1e-40 171.4 112 72.3
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.4e-40 170.2 151 53.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-38 164.5 229 44.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 6.6e-38 162.2 164 50.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.3e-37 159.8 254 35.4
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.1e-35 154.8 138 59.4
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.8e-35 152.1 108 65.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-34 151.0 187 50.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.4e-32 143.7 181 48.1
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.4e-32 143.7 181 48.1
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 7.1e-32 142.1 192 45.8
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 7.8e-31 138.7 148 48.0
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.4e-27 127.1 263 39.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 9.9e-26 121.7 82 70.7
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.6e-23 114.4 81 66.7
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.5e-23 113.2 110 56.4
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.0e-22 111.7 70 61.4
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.0e-22 110.2 94 58.5
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 8.7e-22 108.6 72 62.5
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.3e-21 106.7 168 47.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 9.6e-21 105.1 69 62.3
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 4.8e-20 102.8 79 55.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 2.4e-19 100.5 74 54.1
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 4.0e-19 99.8 110 55.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.0e-18 97.4 66 56.1
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.0e-18 97.4 116 45.7
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 2.6e-18 97.1 64 60.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 5.8e-18 95.9 69 56.5
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 5.8e-18 95.9 69 56.5
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-16 91.3 68 55.9
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-16 91.3 68 55.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 4.2e-16 89.7 74 51.4
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 4.2e-16 89.7 74 51.4
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.2e-15 88.2 78 55.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.9e-14 83.2 92 53.3
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.1e-13 81.6 93 43.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.0e-10 70.9 92 48.9
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 3.5e-07 60.1 87 50.6
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.3e-06 58.2 70 44.3
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.3e-06 57.4 71 45.1
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.1e-06 56.2 59 55.9


User provided reference genes

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