Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.2e-295 1019.2 551 100.0
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.9e-115 418.7 465 50.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.5e-114 417.5 470 51.5
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 3.4e-114 416.4 471 51.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.0e-113 414.8 464 51.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 3.2e-112 409.8 465 49.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 7.2e-112 408.7 504 47.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 9.4e-112 408.3 454 51.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.4e-110 404.4 449 51.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.6e-109 400.2 457 50.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.8e-108 396.7 456 50.2
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 4.8e-108 396.0 462 49.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 4.8e-108 396.0 462 49.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.1e-107 394.8 457 50.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.4e-107 393.7 467 48.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.2e-106 391.3 462 49.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.6e-106 390.2 491 47.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.9e-106 389.0 461 49.2
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.7e-105 387.5 480 48.5
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 4.2e-104 382.9 482 46.1
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-103 381.3 477 48.4
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.2e-102 375.9 446 48.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.2e-102 375.9 481 46.4
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 5.2e-102 375.9 480 46.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 8.8e-102 375.2 414 50.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.3e-100 371.3 499 44.1
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.7e-100 370.9 476 46.2
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.7e-100 370.9 482 46.1
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.2e-100 370.5 487 44.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.8e-100 369.4 469 46.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.8e-100 369.4 463 47.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 4.8e-100 369.4 483 46.8
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 6.3e-100 369.0 469 46.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 6.3e-100 369.0 462 47.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.1e-99 368.2 525 44.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.4e-99 367.9 462 47.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.8e-99 367.5 481 46.4
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.6e-98 364.4 484 45.2
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.7e-98 363.6 474 44.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.5e-98 363.2 480 45.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.5e-98 363.2 446 46.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.5e-98 362.8 485 46.0
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.2e-97 360.5 466 45.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.8e-97 359.8 490 43.7
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 5.0e-97 359.4 468 44.7
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.0e-97 359.4 473 46.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 5.0e-97 359.4 510 43.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-96 358.2 465 44.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-96 357.8 462 45.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-96 357.5 475 44.2
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.5e-96 357.1 506 44.1
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.7e-95 353.6 523 41.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 6.1e-95 352.4 462 45.2
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.0e-94 351.7 508 43.7
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.4e-94 351.3 505 44.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 3.0e-94 350.1 487 44.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-93 347.8 470 44.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.4e-93 346.7 472 44.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.5e-93 345.5 422 48.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.3e-92 344.7 513 41.9
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.3e-92 342.4 423 47.5
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 8.3e-92 342.0 443 44.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.1e-91 340.1 515 40.6
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.1e-91 339.7 451 46.1
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 7.0e-91 339.0 473 44.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 9.1e-91 338.6 473 43.1
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.2e-90 338.2 511 41.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 7.7e-90 335.5 448 43.3
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.3e-89 334.0 468 44.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.5e-88 331.3 459 41.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.6e-87 327.8 432 44.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 4.7e-87 326.2 423 45.6
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.0e-87 325.5 472 44.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.0e-86 325.1 490 41.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.8e-86 322.4 462 41.3
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 4.4e-85 319.7 454 41.6
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.2e-84 317.4 529 39.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.9e-84 316.2 410 45.4
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 8.3e-84 315.5 464 44.4
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-83 315.1 448 43.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.4e-83 314.7 445 43.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.1e-83 313.5 462 41.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 9.2e-83 312.0 451 42.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 9.2e-83 312.0 451 42.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-82 311.6 443 42.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.6e-82 311.2 451 42.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.7e-82 310.5 453 42.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 3.5e-82 310.1 474 41.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.9e-82 309.3 471 40.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.9e-82 309.3 510 40.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.3e-81 307.4 477 39.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.8e-81 306.6 448 40.6
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.9e-80 304.3 453 41.1
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 5.6e-80 302.8 464 40.9
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 9.5e-80 302.0 300 51.3
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.6e-79 301.2 495 39.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.7e-79 299.7 447 40.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-77 295.0 446 40.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.5e-77 294.7 463 41.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.2e-75 287.0 435 39.5
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.6e-74 283.1 451 39.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.2e-71 272.7 457 39.4
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.8e-70 271.2 447 37.8
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 5.2e-70 269.6 441 39.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.2e-67 260.4 462 36.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.4e-67 259.6 377 43.8
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.0e-66 256.1 237 53.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.3e-65 255.0 350 45.1
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.7e-55 219.9 436 35.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.6e-53 214.2 301 46.5
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.2e-51 207.2 178 54.5
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.6e-50 203.4 258 46.5
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.1e-47 194.5 292 45.2
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.7e-47 193.4 287 44.9
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.4e-45 187.2 348 37.1
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.1e-42 177.9 231 42.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-41 174.5 299 43.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 9.0e-38 162.5 145 51.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.2e-35 154.1 290 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.8e-33 148.3 210 43.3
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 6.7e-33 146.4 284 34.5
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.7e-33 146.4 348 34.8
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.9e-32 144.8 283 35.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.3e-31 142.1 282 34.4
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.0e-30 136.0 213 39.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.2e-28 131.3 374 28.3
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.4e-27 127.9 213 37.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.1e-27 126.3 368 28.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 3.9e-25 120.6 131 46.6
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.8e-23 114.4 270 30.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-22 111.7 88 52.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-22 111.7 88 52.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-19 102.4 132 43.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-18 99.0 197 38.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.0e-17 95.9 300 28.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.3e-16 90.9 451 23.3
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.3e-16 90.9 451 23.3
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.3e-16 90.9 451 23.3
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 2.2e-15 88.2 451 23.7
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 2.2e-15 88.2 451 23.7
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 4.8e-15 87.0 451 23.7
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-15 87.0 173 32.4
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.3e-06 57.0 101 40.6


User provided reference genes

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