Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11519 Sapria himalayana HOM05D004262 ORTHO05D004886 2.7e-247 858.2 440 100.0
GSVIVG01026616001 Vitis vinifera HOM05D004262 ORTHO05D004886 9.0e-73 278.5 457 39.6
Dinv12126 Davidia involucrata HOM05D004262 ORTHO05D004886 1.9e-70 270.8 459 35.9
Thecc.01G119500 Theobroma cacao HOM05D004262 ORTHO05D004886 2.5e-67 260.4 483 36.4
CSS0008059 Camellia sinensis var. sinensis HOM05D004262 ORTHO05D004886 9.6e-67 258.5 460 36.1
Lj2A589G33 Lonicera japonica HOM05D004262 ORTHO05D004886 9.6e-67 258.5 453 37.5
Manes.13G082100 Manihot esculenta HOM05D004262 ORTHO05D004886 1.3e-66 258.1 470 38.9
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 1.3e-66 258.1 490 36.9
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 1.3e-66 258.1 490 36.9
QL06p030897 Quercus lobata HOM05D004262 ORTHO05D004886 6.2e-66 255.8 493 35.9
Dinv15095 Davidia involucrata HOM05D004262 ORTHO05D004886 1.1e-65 255.0 457 37.9
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 4.0e-65 253.1 497 36.2
Duzib147G0824 Durio zibethinus HOM05D004262 ORTHO05D004886 3.8e-63 246.5 485 36.1
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 4.9e-63 246.1 459 35.7
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 4.9e-63 246.1 489 35.8
TWI31G0151 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 1.9e-62 244.2 477 36.5
PGSC0003DMG400003967 Solanum tuberosum HOM05D004262 ORTHO05D004886 2.4e-62 243.8 419 35.8
Duzib187G1764 Durio zibethinus HOM05D004262 ORTHO05D004886 3.2e-62 243.4 460 37.4
Rhsim10G0142400 Rhododendron simsii HOM05D004262 ORTHO05D004886 3.2e-62 243.4 445 36.4
Cpa.g.sc72.29 Carica papaya HOM05D004262 ORTHO05D004886 7.1e-62 242.3 453 37.1
Cc07_g17550 Coffea canephora HOM05D004262 ORTHO05D004886 7.1e-62 242.3 476 34.7
vmacro12820 Vaccinium macrocarpon HOM05D004262 ORTHO05D004886 2.1e-61 240.7 438 35.8
Gohir.D11G226360 Gossypium hirsutum HOM05D004262 ORTHO05D004886 1.3e-60 238.0 490 34.1
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.8e-60 237.7 466 35.4
Nitab4.5_0001582g0040 Nicotiana tabacum HOM05D004262 ORTHO05D004886 5.1e-60 236.1 444 35.1
Sopen11g001450 Solanum pennellii HOM05D004262 ORTHO05D004886 5.1e-60 236.1 420 34.5
Gorai.002G150600 Gossypium raimondii HOM05D004262 ORTHO05D004886 6.7e-60 235.7 491 33.8
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 1.5e-59 234.6 527 33.8
Peaxi162Scf00025g02620 Petunia axillaris HOM05D004262 ORTHO05D004886 2.5e-59 233.8 444 34.7
Oeu064303.1 Olea europaea HOM05D004262 ORTHO05D004886 4.3e-59 233.0 446 35.7
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 7.4e-59 232.3 498 34.1
CiPaw.04G087100 Carya illinoinensis HOM05D004262 ORTHO05D004886 1.3e-58 231.5 487 35.1
Actinidia09812 Actinidia chinensis HOM05D004262 ORTHO05D004886 2.1e-58 230.7 459 34.2
Solyc11g005440.2 Solanum lycopersicum HOM05D004262 ORTHO05D004886 2.1e-58 230.7 424 34.4
Gohir.A11G223950 Gossypium hirsutum HOM05D004262 ORTHO05D004886 3.7e-58 229.9 491 34.0
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 3.1e-57 226.9 458 34.3
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 5.3e-57 226.1 491 33.0
CAN.G516.2 Capsicum annuum HOM05D004262 ORTHO05D004886 1.2e-56 224.9 421 34.0
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 1.5e-56 224.6 493 34.3
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 1.5e-56 224.6 484 33.1
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 3.4e-56 223.4 458 34.9
Sed0013193 Sechium edule HOM05D004262 ORTHO05D004886 7.6e-56 222.2 480 33.1
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 1.7e-55 221.1 440 35.7
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 2.9e-55 220.3 468 33.1
PGR119G1219 Punica granatum HOM05D004262 ORTHO05D004886 6.5e-55 219.2 471 32.9
AL6G20250 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 7.1e-54 215.7 473 31.5
Sp6g33570 Schrenkiella parvula HOM05D004262 ORTHO05D004886 7.1e-54 215.7 473 32.6
TWI79G1577 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 3.5e-53 213.4 480 33.1
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 1.0e-52 211.8 421 34.7
EL10Ac6g15245 Beta vulgaris HOM05D004262 ORTHO05D004886 2.3e-52 210.7 466 33.5
RcHm_v2.0_Chr2g0119261 Rosa chinensis HOM05D004262 ORTHO05D004886 2.3e-52 210.7 505 31.5
HanXRQChr10g0296711 Helianthus annuus HOM05D004262 ORTHO05D004886 8.7e-52 208.8 424 33.5
MD01G1017000 Malus domestica HOM05D004262 ORTHO05D004886 8.7e-52 208.8 520 30.2
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 1.5e-51 208.0 510 30.6
Thhalv10012635m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 2.5e-51 207.2 469 31.6
COL.COLO4_22393 Corchorus olitorius HOM05D000258 ORTHO05D000153 4.3e-51 206.5 473 33.2
Eucgr.I00260 Eucalyptus grandis HOM05D004262 ORTHO05D004886 4.3e-51 206.5 162 61.7
AT5G09840 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 5.7e-51 206.1 482 30.5
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 5.7e-51 206.1 494 30.0
Nitab4.5_0004021g0030 Nicotiana tabacum HOM05D004262 ORTHO05D004886 7.4e-51 205.7 414 33.1
CARHR203550 Cardamine hirsuta HOM05D004262 ORTHO05D004886 9.6e-51 205.3 466 32.8
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 5.3e-49 199.5 469 31.3
FvH4_1g23660 Fragaria vesca HOM05D004262 ORTHO05D004886 9.0e-49 198.7 493 32.3
FAN28G2830 Fragaria x ananassa HOM05D004262 ORTHO05D004886 9.0e-49 198.7 493 30.8
FAN19G0674 Fragaria x ananassa HOM05D004262 ORTHO05D004886 1.5e-48 198.0 493 32.0
FAN23G1672 Fragaria x ananassa HOM05D004262 ORTHO05D004886 1.5e-48 198.0 490 32.0
THA.LOC104799402 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 3.4e-48 196.8 452 32.7
FAN26G0764 Fragaria x ananassa HOM05D004262 ORTHO05D004886 4.5e-48 196.4 490 31.4
Lj1g0022256 Lotus japonicus HOM05D004262 ORTHO05D004886 1.0e-47 195.3 485 32.0
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 6.5e-47 192.6 436 32.8
Sc16g0004000 Simmondsia chinensis HOM05D004262 ORTHO05D004886 8.4e-47 192.2 453 30.9
Ah.02g122290 Amaranthus hybridus HOM05D004262 ORTHO05D004886 1.9e-46 191.0 446 32.3
BraA10t44814Z Brassica rapa HOM05D004262 ORTHO05D004886 3.5e-45 186.8 472 31.8
A10p27620 Brassica napus HOM05D004262 ORTHO05D004886 4.6e-45 186.4 472 31.8
ATR0820G094 Amborella trichopoda HOM05D004262 ORTHO05D004886 7.9e-45 185.7 457 32.6
CDE06G2757 Ceratophyllum demersum HOM05D004262 ORTHO05D004886 1.0e-44 185.3 424 31.8
MELO3C023273.2 Cucumis melo HOM05D004262 ORTHO05D004886 1.8e-44 184.5 275 40.7
THA.LOC104818467 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 2.3e-44 184.1 159 56.6
COL.COLO4_23999 Corchorus olitorius HOM05D000145 ORTHO05D004886 3.9e-44 183.3 172 57.0
ECA234G3594 Erigeron canadensis HOM05D004262 ORTHO05D004886 5.1e-44 183.0 475 30.9
AUR62017940 Chenopodium quinoa HOM05D004262 ORTHO05D004886 1.5e-43 181.4 434 30.6
Aa31LG3G17280 Aethionema arabicum HOM05D004262 ORTHO05D004886 3.3e-43 180.3 424 31.1
Thhalv10005625m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 3.3e-43 180.3 431 32.9
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 3.3e-43 180.3 158 55.7
Aa31LG1G17200 Aethionema arabicum HOM05D004262 ORTHO05D004886 4.3e-43 179.9 436 30.7
CANSAT01G2046 Cannabis sativa HOM05D004262 ORTHO05D004886 5.7e-43 179.5 547 28.2
TPR.G18728 Trifolium pratense HOM05D004262 ORTHO05D004886 5.7e-43 179.5 517 30.2
CARHR278700 Cardamine hirsuta HOM05D004262 ORTHO05D004886 1.6e-42 177.9 423 31.4
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 3.7e-42 176.8 503 30.6
BolC9t59530H Brassica oleracea HOM05D004262 ORTHO05D004886 3.7e-42 176.8 479 30.7
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 6.3e-42 176.0 490 30.0
BcaB08g37177 Brassica carinata HOM05D004262 ORTHO05D004886 1.1e-41 175.3 467 30.4
C09p67680 Brassica napus HOM05D004262 ORTHO05D004886 1.1e-41 175.3 479 30.5
CsaV3_2G018000 Cucumis sativus L. HOM05D004262 ORTHO05D004886 1.1e-41 175.3 273 40.7
Carub.0008s2552 Capsella rubella HOM05D004262 ORTHO05D004886 3.1e-41 173.7 429 31.2
Psat5g062600 Pisum sativum HOM05D004262 ORTHO05D004886 3.1e-41 173.7 249 42.6
AL8G42160 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 5.3e-41 172.9 436 31.2
arahy.Tifrunner.gnm1.ann1.3RI1TB Arachis hypogaea HOM05D004262 ORTHO05D004886 9.0e-41 172.2 175 49.7
AUR62003631 Chenopodium quinoa HOM05D004262 ORTHO05D004886 1.5e-40 171.4 438 29.7
AT5G64710 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 2.6e-40 170.6 414 30.4
Lj4C857T4 Lonicera japonica HOM05D004262 ORTHO05D004886 4.5e-40 169.9 416 32.2
Phvul.009G147000 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 4.5e-40 169.9 467 31.3
SGA_v2.0_scaffold2G01256 Striga asiatica HOM05D004262 ORTHO05D004886 1.3e-39 168.3 160 50.0
Ca_16911_v3 Cicer arietinum L. HOM05D004262 ORTHO05D004886 2.9e-39 167.2 171 50.3
DCAR_001416 Daucus carota HOM05D004262 ORTHO05D004886 2.9e-39 167.2 462 28.1
VMungo1309G1096 Vigna mungo HOM05D004262 ORTHO05D004886 3.8e-39 166.8 469 28.6
Sp2g27780 Schrenkiella parvula HOM05D004262 ORTHO05D004886 8.5e-39 165.6 435 31.0
arahy.Tifrunner.gnm1.ann1.H08UBS Arachis hypogaea HOM05D004262 ORTHO05D004886 1.9e-38 164.5 223 42.2
HPP92_002646 Vanilla planifolia HOM05D004262 ORTHO05D004886 2.7e-37 160.6 148 53.4
Medtr3g095410 Medicago truncatula HOM05D004262 ORTHO05D004886 4.6e-37 159.8 175 48.0
Hund19612 Selenicereus undatus HOM05D004262 ORTHO05D004886 5.1e-36 156.4 263 36.1
BcaB07g29753 Brassica carinata HOM05D004262 ORTHO05D004886 6.7e-36 156.0 163 47.2
A02p43420 Brassica napus HOM05D004262 ORTHO05D004886 8.8e-36 155.6 178 48.3
BraA02t09267Z Brassica rapa HOM05D004262 ORTHO05D004886 8.8e-36 155.6 178 48.3
BcaC03g18272 Brassica carinata HOM05D004262 ORTHO05D004886 2.0e-35 154.5 163 49.7
BolC2t12417H Brassica oleracea HOM05D004262 ORTHO05D004886 2.0e-35 154.5 163 49.7
C02p63520 Brassica napus HOM05D004262 ORTHO05D004886 2.5e-35 154.1 267 36.3
Glyma.05G045500 Glycine max HOM05D004262 ORTHO05D004886 3.3e-35 153.7 184 45.7
Hund03495 Selenicereus undatus HOM05D004262 ORTHO05D004886 4.1e-33 146.7 178 45.5
VMungo1215G2230 Vigna mungo HOM05D004262 ORTHO05D004886 9.1e-33 145.6 185 43.8
PSO675G0841 Papaver somniferum HOM05D004262 ORTHO05D004886 1.2e-32 145.2 162 46.9
Phvul.003G208800 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 4.5e-32 143.3 190 41.6
Glyma.17G127700 Glycine max HOM05D004262 ORTHO05D004886 1.7e-31 141.4 181 42.5
Medtr7g077430 Medicago truncatula HOM05D004262 ORTHO05D004886 1.1e-30 138.7 167 43.7
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 1.4e-30 138.3 266 33.8
Glyma.04G216500 Glycine max HOM05D004262 ORTHO05D004886 2.1e-29 134.4 269 33.5
Medtr8g011570 Medicago truncatula HOM05D004262 ORTHO05D004886 1.5e-27 128.3 212 37.3
Medtr8g011120 Medicago truncatula HOM05D004262 ORTHO05D004886 2.0e-27 127.9 212 37.3
Lj2A577G25 Lonicera japonica HOM05D004262 ORTHO05D004886 7.4e-27 125.9 172 46.5
Os11g0167300 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 1.3e-26 125.2 232 35.3
Medtr4g098990 Medicago truncatula HOM05D004262 ORTHO05D004886 3.7e-26 123.6 156 43.6
Zm00001eb139430 Zea mays HOM05D004262 ORTHO05D004886 4.8e-26 123.2 250 32.8
Lalb_Chr08g0238681 Lupinus albus HOM05D004262 ORTHO05D004886 5.3e-25 119.8 118 49.2
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.0e-24 117.9 148 43.9
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 4.5e-24 116.7 150 46.7
Sed0020078 Sechium edule HOM05D004262 ORTHO05D004886 8.5e-23 112.5 156 39.1
Glyma.04G205700 Glycine max HOM05D004262 ORTHO05D004886 3.5e-16 90.5 89 50.6
Glyma.04G201800 Glycine max HOM05D004262 ORTHO05D004886 1.6e-13 81.6 66 59.1
TPR.G12261 Trifolium pratense HOM05D004262 ORTHO05D004886 5.7e-11 73.2 59 55.9
Medtr8g011130 Medicago truncatula HOM05D004262 ORTHO05D004886 3.1e-09 67.4 167 29.3
Gohir.D11G259666 Gossypium hirsutum HOM05D004262 ORTHO05D004886 5.4e-09 66.6 114 32.5
Medtr8g011565 Medicago truncatula HOM05D004262 ORTHO05D004886 1.6e-08 65.1 171 29.2
BcaB08g37170 Brassica carinata HOM05D004262 ORTHO05D004886 2.7e-08 64.3 254 26.0
CDE08G1698 Ceratophyllum demersum HOM05D004262 ORTHO05D128839 4.5e-08 63.5 86 39.5
Dinv15097 Davidia involucrata HOM05D004262 ORTHO05D004886 2.2e-07 61.2 59 49.2
Gorai.007G277700 Gossypium raimondii HOM05D004262 ORTHO05D004886 6.5e-07 59.7 241 27.4
Medtr4g101170 Medicago truncatula HOM05D004262 ORTHO05D004886 3.2e-06 57.4 66 45.5


User provided reference genes

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