Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.9e-107 392.5 194 100.0
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 7.1e-22 108.2 113 53.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 3.8e-15 85.9 123 48.0
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.4e-14 84.0 123 48.0
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 4.6e-13 79.0 106 46.2
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 4.6e-13 79.0 89 48.3
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.0e-12 76.3 106 45.3
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.0e-12 76.3 105 43.8
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.9e-12 75.9 124 44.4
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.5e-11 73.9 115 45.2
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.9e-11 73.6 113 40.7
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 2.5e-11 73.2 105 42.9
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.5e-11 73.2 105 44.8
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 4.3e-11 72.4 98 44.9
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 7.3e-11 71.6 132 39.4
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.3e-10 70.9 92 47.8
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 1.3e-10 70.9 104 44.2
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.6e-10 70.5 106 42.5
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 1.6e-10 70.5 105 41.9
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.1e-10 70.1 106 46.2
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.1e-10 70.1 116 40.5
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 3.6e-10 69.3 105 43.8
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 4.8e-10 68.9 116 40.5
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.8e-10 68.9 106 44.3
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 6.2e-10 68.6 114 40.4
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 6.2e-10 68.6 106 40.6
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 8.1e-10 68.2 106 43.4
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.4e-09 67.4 113 43.4
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.4e-09 67.4 104 41.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.8e-09 67.0 113 40.7
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.8e-09 67.0 118 39.0
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.8e-09 67.0 113 39.8
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.8e-09 67.0 100 46.0
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.8e-09 67.0 105 41.9
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.4e-09 66.6 104 39.4
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 3.1e-09 66.2 110 42.7
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.1e-09 66.2 110 42.7
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 3.1e-09 66.2 112 43.8
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.1e-09 66.2 134 39.6
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.1e-09 66.2 73 50.7
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 5.3e-09 65.5 114 41.2
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 5.3e-09 65.5 104 42.3
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 6.9e-09 65.1 109 44.0
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 6.9e-09 65.1 103 41.7
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.2e-08 64.3 105 41.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.2e-08 64.3 108 40.7
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.2e-08 64.3 85 44.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.2e-08 64.3 86 45.3
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.2e-08 64.3 68 55.9
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.2e-08 64.3 106 41.5
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.5e-08 63.9 117 43.6
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.5e-08 63.9 109 42.2
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.5e-08 63.9 117 38.5
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 2.0e-08 63.5 73 49.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.6e-08 63.2 73 49.3
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 3.4e-08 62.8 71 53.5
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 3.4e-08 62.8 71 53.5
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 4.5e-08 62.4 74 48.6
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 4.5e-08 62.4 74 48.6
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 5.8e-08 62.0 108 43.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 5.8e-08 62.0 87 44.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 5.8e-08 62.0 111 37.8
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 5.8e-08 62.0 75 52.0
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.8e-08 62.0 73 49.3
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 7.6e-08 61.6 112 43.8
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 7.6e-08 61.6 108 39.8
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 7.6e-08 61.6 103 40.8
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.3e-07 60.8 107 41.1
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.3e-07 60.8 73 49.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.7e-07 60.5 108 38.0
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 2.2e-07 60.1 105 38.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 2.9e-07 59.7 116 41.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.9e-07 59.7 86 44.2
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.9e-07 59.7 105 40.0
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 3.8e-07 59.3 105 41.0
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.8e-07 59.3 123 38.2
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 4.9e-07 58.9 75 49.3
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 6.4e-07 58.5 106 40.6
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 8.4e-07 58.2 99 40.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.1e-06 57.8 110 36.4
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.1e-06 57.8 76 47.4
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.1e-06 57.8 153 36.6
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.4e-06 57.4 106 39.6
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.9e-06 57.0 106 39.6
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.9e-06 57.0 74 45.9
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 1.9e-06 57.0 74 45.9
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.4e-06 56.6 92 43.5
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.4e-06 56.6 107 41.1
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 3.2e-06 56.2 82 46.3
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 4.2e-06 55.8 124 37.9
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 4.2e-06 55.8 124 37.9
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 7.1e-06 55.1 80 42.5
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 7.1e-06 55.1 106 38.7
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 7.1e-06 55.1 111 41.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 7.1e-06 55.1 122 37.7
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 9.3e-06 54.7 110 34.5
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 9.3e-06 54.7 74 48.6
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 9.3e-06 54.7 73 45.2


User provided reference genes

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