Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 3.0e-243 845.1 546 100.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.4e-106 389.8 497 49.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.7e-103 380.2 523 48.4
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.9e-99 365.5 532 46.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.3e-97 361.3 523 46.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.9e-97 360.1 467 49.5
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 5.0e-97 359.4 521 47.6
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.9e-96 357.5 463 50.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.2e-96 355.5 467 50.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 9.3e-96 355.1 530 46.2
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 4.6e-95 352.8 521 47.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.8e-94 350.9 509 45.6
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.8e-94 350.9 530 44.9
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.9e-94 349.7 431 51.0
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 5.1e-94 349.4 495 47.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.1e-93 348.2 524 47.3
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.5e-93 347.8 494 47.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.5e-93 347.1 537 46.6
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 7.4e-93 345.5 453 48.1
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 7.4e-93 345.5 452 49.1
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 9.7e-93 345.1 430 51.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.3e-92 344.7 488 48.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 8.2e-92 342.0 439 49.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 8.2e-92 342.0 472 47.9
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.8e-91 340.9 390 49.5
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.8e-91 340.9 494 44.3
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.8e-91 340.9 484 47.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.1e-91 340.1 440 50.5
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.1e-91 339.7 451 49.9
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 4.1e-91 339.7 495 46.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 6.9e-91 339.0 413 48.4
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.1e-91 338.6 455 48.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-90 338.2 484 47.7
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.5e-90 337.8 477 46.8
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.0e-90 337.4 356 57.9
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.0e-90 337.4 495 47.7
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.0e-90 337.4 481 47.6
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.6e-90 337.0 453 49.0
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.6e-90 337.0 428 50.7
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 3.4e-90 336.7 484 47.5
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 5.9e-90 335.9 481 47.2
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.0e-89 335.1 433 50.6
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.9e-89 333.6 439 49.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.0e-89 332.8 484 47.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-89 332.4 494 47.6
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 6.5e-89 332.4 499 46.7
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.1e-88 331.6 468 45.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.4e-88 331.3 460 44.3
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.9e-88 330.9 460 47.4
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 2.5e-88 330.5 469 46.9
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.2e-88 329.7 456 45.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.2e-88 329.7 536 46.5
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.2e-88 329.7 536 46.6
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 9.4e-88 328.6 426 46.0
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-87 328.2 522 46.9
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.6e-87 327.8 486 46.7
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.1e-87 325.9 451 47.9
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.0e-86 323.6 419 48.2
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 5.1e-86 322.8 469 45.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 5.1e-86 322.8 438 46.1
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 8.8e-86 322.0 420 47.6
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 8.8e-86 322.0 435 46.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.5e-85 321.2 493 42.0
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.6e-85 320.5 442 47.5
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.6e-85 320.5 426 46.5
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 3.3e-85 320.1 375 54.9
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 7.4e-85 318.9 501 45.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 7.4e-85 318.9 473 46.3
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.2e-84 317.4 436 49.1
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.8e-84 317.0 458 44.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.8e-84 316.2 355 52.1
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.8e-84 316.2 362 49.2
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 8.2e-84 315.5 418 46.9
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.1e-83 315.1 418 49.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 4.1e-83 313.2 500 44.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 6.9e-83 312.4 443 45.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 9.1e-83 312.0 497 44.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 9.1e-83 312.0 431 45.5
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.2e-82 311.6 430 46.0
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.6e-82 310.5 386 47.2
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.5e-82 309.7 472 45.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.5e-82 309.7 475 41.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.9e-81 307.0 504 43.5
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.9e-81 307.0 493 43.2
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.1e-79 300.8 481 42.2
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 3.6e-79 300.1 421 46.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 8.0e-79 298.9 421 44.2
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.8e-78 297.7 418 46.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.9e-78 296.6 443 42.7
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 5.2e-78 296.2 492 41.1
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.1e-77 295.0 403 44.2
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.1e-77 295.0 445 44.7
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.6e-77 293.9 389 44.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 2.2e-76 290.8 453 45.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.8e-76 290.4 451 44.1
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 9.1e-75 285.4 284 52.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 4.5e-74 283.1 284 52.1
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.9e-74 282.7 372 49.7
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 7.7e-74 282.3 455 40.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.0e-73 282.0 284 52.1
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.0e-73 282.0 284 52.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.5e-73 279.3 426 43.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.6e-71 273.5 384 45.1
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.8e-70 271.2 420 41.4
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 8.8e-70 268.9 392 42.3
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.3e-69 266.9 333 46.5
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.7e-65 254.6 298 48.0
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 6.5e-65 252.7 456 38.2
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.0e-62 245.4 409 39.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 2.3e-62 244.2 325 43.4
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.3e-62 244.2 267 49.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 6.3e-60 236.1 298 45.0
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.1e-59 233.4 493 37.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.2e-56 223.4 355 39.2
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-53 214.5 286 52.1
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.4e-53 213.8 222 53.6
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 9.8e-53 212.2 308 47.4
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.7e-52 210.3 535 33.6
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.7e-52 210.3 413 35.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.4e-51 208.4 340 39.4
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.0e-50 204.5 340 41.8
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 8.6e-49 199.1 315 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.1e-47 194.5 394 35.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.1e-47 194.5 154 63.0
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.0e-42 177.9 268 41.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-39 168.7 379 36.1
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.9e-35 154.8 290 36.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 8.6e-33 146.0 269 36.1
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.3e-32 143.7 174 54.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.4e-22 111.3 162 45.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.9e-20 103.6 140 41.4
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.9e-17 94.0 96 55.2
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 4.3e-16 90.5 98 50.0
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 4.7e-15 87.0 78 55.1
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 4.7e-15 87.0 88 51.1
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 5.8e-13 80.1 111 46.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.6e-10 70.5 120 37.5
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.6e-09 66.6 73 45.2
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-08 65.5 99 57.6
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 3.3e-08 64.3 241 24.1
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.6e-07 62.0 107 52.3


User provided reference genes

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