Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10610 Sapria himalayana HOM05D005056 ORTHO05D006487 7.7e-65 250.4 129 100.0
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 1.2e-09 67.0 66 50.0
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 3.5e-09 65.5 70 45.7
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 7.8e-09 64.3 61 50.8
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 1.0e-08 63.9 57 54.4
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 1.3e-08 63.5 52 57.7
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-08 63.2 59 47.5
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-08 63.2 59 47.5
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-08 63.2 59 47.5
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 1.7e-08 63.2 57 50.9
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 2.3e-08 62.8 66 48.5
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 3.9e-08 62.0 66 47.0
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 3.9e-08 62.0 60 50.0
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 3.9e-08 62.0 60 50.0
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 5.0e-08 61.6 70 45.7
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 5.0e-08 61.6 50 58.0
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 5.0e-08 61.6 50 58.0
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 5.0e-08 61.6 66 48.5
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 5.0e-08 61.6 57 52.6
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 6.6e-08 61.2 62 50.0
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 6.6e-08 61.2 66 47.0
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 8.6e-08 60.8 59 45.8
Cfa015266 Carpinus fangiana HOM05D005056 ORTHO05D006487 1.1e-07 60.5 50 54.0
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.1e-07 60.5 59 45.8
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.1e-07 60.5 54 53.7
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 1.1e-07 60.5 69 44.9
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 1.1e-07 60.5 66 48.5
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.5e-07 60.1 50 56.0
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 1.5e-07 60.1 61 45.9
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 1.5e-07 60.1 61 45.9
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 1.5e-07 60.1 61 45.9
Thhalv10001371m.g Eutrema salsugineum HOM05D005056 ORTHO05D006487 1.5e-07 60.1 50 52.0
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 1.9e-07 59.7 61 44.3
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 1.9e-07 59.7 61 44.3
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 1.9e-07 59.7 66 45.5
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 1.9e-07 59.7 50 52.0
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 2.5e-07 59.3 59 45.8
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 2.5e-07 59.3 69 44.9
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 3.3e-07 58.9 74 41.9
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 3.3e-07 58.9 50 54.0
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.3e-07 58.9 68 47.1
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 3.3e-07 58.9 86 40.7
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 3.3e-07 58.9 61 44.3
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 3.3e-07 58.9 50 52.0
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 4.3e-07 58.5 49 53.1
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 4.3e-07 58.5 85 40.0
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 4.3e-07 58.5 54 51.9
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 5.6e-07 58.2 53 47.2
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 5.6e-07 58.2 50 54.0
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 7.3e-07 57.8 50 54.0
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 7.3e-07 57.8 90 35.6
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 7.3e-07 57.8 66 47.0
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 7.3e-07 57.8 69 43.5
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 7.3e-07 57.8 54 50.0
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 9.5e-07 57.4 50 48.0
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 9.5e-07 57.4 50 50.0
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 1.2e-06 57.0 67 41.8
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 1.2e-06 57.0 63 44.4
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 1.2e-06 57.0 72 44.4
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 1.2e-06 57.0 79 40.5
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 1.2e-06 57.0 52 51.9
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 1.6e-06 56.6 57 49.1
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 1.6e-06 56.6 50 48.0
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 2.1e-06 56.2 50 48.0
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 2.1e-06 56.2 68 45.6
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 2.1e-06 56.2 50 48.0
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.8e-06 55.8 54 50.0
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.8e-06 55.8 50 48.0
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.8e-06 55.8 50 48.0
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 2.8e-06 55.8 76 38.2
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 3.6e-06 55.5 50 48.0
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 3.6e-06 55.5 62 46.8
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 3.6e-06 55.5 46 56.5
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 3.6e-06 55.5 50 50.0
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 3.6e-06 55.5 50 50.0
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 4.7e-06 55.1 55 45.5
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 4.7e-06 55.1 36 66.7
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 6.2e-06 54.7 50 50.0
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 8.1e-06 54.3 36 63.9


User provided reference genes

Program Settings