Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 1.0e-82 310.1 159 100.0
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 7.8e-27 124.4 83 77.1
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 7.8e-27 124.4 82 78.0
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 6.6e-26 121.3 82 73.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 8.6e-26 120.9 82 73.2
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 8.6e-26 120.9 82 73.2
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 8.6e-26 120.9 82 75.6
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.1e-25 120.6 82 74.4
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.1e-25 120.6 82 74.4
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.1e-25 120.6 82 73.2
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.5e-25 120.2 82 73.2
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.9e-25 119.8 82 74.4
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.9e-25 119.8 82 73.2
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.9e-25 119.8 82 73.2
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.5e-25 119.4 80 75.0
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 4.3e-25 118.6 82 73.2
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.3e-25 118.6 82 72.0
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 9.6e-25 117.5 80 75.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 9.6e-25 117.5 82 73.2
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.2e-24 117.1 82 72.0
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.2e-24 117.1 82 72.0
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.6e-24 116.7 82 74.4
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.1e-24 116.3 80 76.2
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.1e-24 116.3 82 73.2
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 2.1e-24 116.3 81 72.8
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.8e-24 115.9 82 70.7
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 2.8e-24 115.9 82 72.0
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 3.6e-24 115.5 82 72.0
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 3.6e-24 115.5 82 72.0
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 3.6e-24 115.5 82 72.0
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.6e-24 115.5 82 70.7
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.6e-24 115.5 82 70.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 3.6e-24 115.5 80 75.0
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 4.7e-24 115.2 82 70.7
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 4.7e-24 115.2 81 71.6
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 6.2e-24 114.8 82 70.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 6.2e-24 114.8 82 70.7
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 6.2e-24 114.8 80 73.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 6.2e-24 114.8 80 72.5
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 6.2e-24 114.8 82 70.7
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 8.1e-24 114.4 82 69.5
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.1e-24 114.4 82 70.7
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.1e-23 114.0 82 69.5
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.4e-23 113.6 82 69.5
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.4e-23 113.6 82 69.5
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.4e-23 113.6 80 73.8
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.8e-23 113.2 80 73.8
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.0e-23 112.1 82 69.5
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.0e-23 112.1 82 69.5
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.0e-23 112.1 82 69.5
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 5.2e-23 111.7 80 70.0
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 8.9e-23 110.9 140 49.3
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.2e-22 110.5 80 70.0
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.2e-22 110.5 80 68.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.2e-22 110.5 74 78.4
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.2e-22 110.5 82 68.3
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.2e-22 110.5 82 68.3
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.5e-22 110.2 80 71.2
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.5e-22 110.2 80 71.2
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.0e-22 109.8 80 71.2
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.0e-22 109.8 82 68.3
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.0e-22 109.8 82 68.3
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 2.6e-22 109.4 82 68.3
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 2.6e-22 109.4 80 70.0
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 4.4e-22 108.6 82 65.9
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 4.4e-22 108.6 80 67.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.4e-22 108.6 80 67.5
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 4.4e-22 108.6 152 42.1
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 5.8e-22 108.2 82 64.6
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.3e-21 107.1 82 68.3
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-21 106.7 82 67.1
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 2.2e-21 106.3 80 65.0
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 2.2e-21 106.3 82 63.4
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 2.2e-21 106.3 82 65.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 2.2e-21 106.3 80 70.0
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 3.8e-21 105.5 82 59.8
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 3.8e-21 105.5 82 59.8
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 6.4e-21 104.8 80 65.0
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 8.4e-21 104.4 80 68.8
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 1.4e-20 103.6 80 65.0
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 3.2e-20 102.4 80 65.0
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 3.2e-20 102.4 80 66.2
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.2e-20 102.1 109 56.0
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 4.2e-20 102.1 82 62.2
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 5.4e-20 101.7 80 62.5
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 7.1e-20 101.3 80 66.2
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 7.1e-20 101.3 80 62.5
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.2e-19 100.5 80 66.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.2e-19 100.5 80 66.2
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.2e-19 100.5 80 66.2
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 1.2e-19 100.5 80 66.2
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 1.2e-19 100.5 80 66.2
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.6e-19 100.1 80 68.8
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.1e-19 99.8 80 65.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 2.1e-19 99.8 80 65.0
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 66.2
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 66.2
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 66.2
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 66.2
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 66.2
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 2.7e-19 99.4 80 62.5
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 3.5e-19 99.0 82 57.3
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.5e-19 99.0 80 63.8
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 4.6e-19 98.6 80 63.8
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 4.6e-19 98.6 82 63.4
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 4.6e-19 98.6 80 61.2
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 6.0e-19 98.2 80 65.0
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 6.0e-19 98.2 117 52.1
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 7.8e-19 97.8 80 63.8
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 7.8e-19 97.8 80 62.5
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.0e-18 97.4 74 67.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.3e-18 97.1 80 63.8
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.7e-18 96.7 80 63.8
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.7e-18 96.7 80 63.8
SHI03259 Sapria himalayana HOM05D000030 ORTHO05D000009 3.0e-18 95.9 69 69.6
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.1e-18 95.1 80 57.5
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 5.1e-18 95.1 128 46.9
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-17 92.4 80 60.0
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-17 92.4 80 60.0
SHI17057 Sapria himalayana HOM05D000030 ORTHO05D000009 3.3e-17 92.4 61 73.8
SHI16609 Sapria himalayana HOM05D000030 ORTHO05D000009 7.3e-17 91.3 62 74.2
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 9.6e-17 90.9 61 77.0
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 9.6e-17 90.9 61 75.4
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.3e-16 90.5 59 78.0
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.3e-16 90.5 82 56.1
SHI31737 Sapria himalayana HOM05D000030 ORTHO05D000009 1.3e-16 90.5 58 77.6
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 6.2e-16 88.2 80 51.2
SHI24940 Sapria himalayana HOM05D000030 ORTHO05D000009 8.1e-16 87.8 61 70.5
SHI16775 Sapria himalayana HOM05D000030 ORTHO05D000009 1.4e-15 87.0 61 68.9
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.8e-15 86.7 80 57.5
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 2.4e-15 86.3 80 60.0
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.3e-15 85.1 62 67.7
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 3.4e-14 82.4 82 52.4
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.4e-14 82.4 80 50.0
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 4.4e-14 82.0 61 70.5
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.2e-12 75.5 82 52.4
Thecc.03G058900 Theobroma cacao HOM05D000030 ORTHO05D000009 1.3e-08 63.9 70 42.9
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.6e-08 63.5 60 56.7
Thecc.08G159500 Theobroma cacao HOM05D000030 ORTHO05D000009 3.6e-08 62.4 70 44.3
SHI40305 Sapria himalayana HOM05D000030 ORTHO05D000009 9.0e-07 57.8 45 66.7
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 9.0e-07 57.8 46 63.0
HanXRQChr04g0107561 Helianthus annuus HOM05D000030 ORTHO05D000009 4.5e-06 55.5 68 41.2
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 5.8e-06 55.1 36 77.8
HanXRQChr09g0242491 Helianthus annuus HOM05D000030 ORTHO05D000009 9.9e-06 54.3 68 39.7


User provided reference genes

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