Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 5.5e-127 457.6 224 100.0
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.0e-80 303.9 160 94.4
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 3.7e-75 285.4 159 89.9
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 3.7e-75 285.4 159 89.9
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 6.0e-73 278.1 159 88.7
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.4e-69 266.9 149 89.3
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 8.9e-69 264.2 148 89.2
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 3.4e-68 262.3 150 88.7
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 3.7e-67 258.8 151 88.7
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.9e-64 248.8 142 88.7
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 5.8e-60 235.0 149 81.9
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 9.9e-60 234.2 130 90.8
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 5.4e-58 228.4 125 89.6
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 5.4e-58 228.4 125 89.6
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-58 227.6 135 83.0
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 1.9e-55 219.9 133 84.2
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 9.9e-52 207.6 104 96.2
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.3e-51 207.2 189 61.9
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 1.1e-50 204.1 118 86.4
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 5.4e-50 201.8 128 81.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 2.7e-49 199.5 104 93.3
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 4.6e-49 198.7 113 85.8
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 6.0e-49 198.4 105 92.4
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.0e-48 197.6 105 92.4
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.7e-48 196.8 107 89.7
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 2.3e-48 196.4 105 91.4
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 3.0e-48 196.1 105 91.4
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 6.6e-48 194.9 105 90.5
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 8.7e-48 194.5 105 90.5
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.5e-47 193.7 105 90.5
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 2.5e-47 193.0 105 90.5
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 3.3e-47 192.6 105 88.6
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 3.3e-47 192.6 105 88.6
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.6e-47 191.8 109 85.3
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.6e-46 189.1 105 88.6
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.6e-46 189.1 105 88.6
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 3.6e-46 189.1 107 86.9
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-45 187.6 103 89.3
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.4e-45 187.2 105 86.7
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 9.0e-45 184.5 97 92.8
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 5.8e-44 181.8 103 88.3
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 4.2e-42 175.6 103 83.5
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 9.3e-42 174.5 103 81.6
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 2.1e-41 173.3 93 91.4
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 3.5e-41 172.6 103 79.6
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 4.6e-41 172.2 103 78.6
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.0e-40 171.0 95 88.4
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 5.6e-39 165.2 104 81.7
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.8e-37 160.2 94 83.0
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.5e-36 157.1 125 67.2
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.9e-35 152.9 86 83.7
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 4.9e-35 152.1 83 89.2
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 8.4e-35 151.4 113 69.0
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.1e-34 151.0 84 86.9
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 2.7e-33 146.4 82 85.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 4.6e-33 145.6 81 86.4
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 1.8e-32 143.7 90 77.8
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.8e-32 143.7 72 95.8
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 6.7e-32 141.7 76 90.8
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 1.1e-31 141.0 102 67.6
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.8e-30 135.6 74 87.8
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 4.8e-30 135.6 113 66.4
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.4e-29 134.0 102 63.7
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 9.0e-29 131.3 70 88.6
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.4e-28 129.4 113 57.5
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 6.0e-25 118.6 99 65.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.0e-24 117.9 81 72.8
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.0e-24 117.9 67 82.1
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 2.3e-24 116.7 76 73.7
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 3.0e-24 116.3 91 59.3
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.5e-23 113.2 65 90.8
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 9.6e-23 111.3 75 78.7
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 9.6e-23 111.3 75 78.7
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 4.1e-21 105.9 56 85.7
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.2e-19 100.1 72 68.1
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 5.0e-19 99.0 59 83.1
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 6.5e-19 98.6 72 62.5
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.2e-18 95.1 57 77.2
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 9.3e-18 94.7 60 71.7
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.6e-17 94.0 54 75.9
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 7.4e-15 85.1 45 84.4
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 1.4e-13 80.9 46 78.3
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.1e-13 79.3 39 97.4
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 9.0e-13 78.2 42 83.3
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 2.0e-12 77.0 71 63.4
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 2.0e-12 77.0 68 60.3
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.9e-11 73.2 47 70.2
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 9.4e-10 68.2 53 62.3
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 1.6e-09 67.4 36 91.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.0e-08 63.2 49 61.2
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.0e-07 60.5 49 63.3
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.0e-07 60.5 35 82.9
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 4.8e-06 55.8 44 59.1


User provided reference genes

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