Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 0.0e+00 1903.3 936 100.0
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 0.0e+00 1469.5 927 78.3
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 1421.0 929 74.9
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 1417.9 926 75.5
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 1416.0 929 75.1
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 1411.4 929 74.7
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1410.2 929 74.6
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1408.7 929 74.7
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 0.0e+00 1408.3 929 74.8
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 1407.9 929 74.6
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 0.0e+00 1407.5 928 75.0
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 0.0e+00 1407.5 929 74.6
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 0.0e+00 1407.1 929 75.1
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 1406.3 926 74.4
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1405.6 929 74.3
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1403.7 929 74.6
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 0.0e+00 1403.3 929 75.0
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 0.0e+00 1402.1 936 74.3
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 0.0e+00 1398.3 930 74.0
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 1397.1 955 73.1
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 0.0e+00 1387.5 930 74.1
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 0.0e+00 1383.6 929 73.8
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 1383.2 926 73.7
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 0.0e+00 1381.3 927 73.4
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 0.0e+00 1377.5 929 73.3
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 0.0e+00 1376.3 929 73.6
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 1374.4 928 73.3
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 0.0e+00 1374.0 928 72.1
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 0.0e+00 1373.6 929 73.2
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 1372.5 929 72.9
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 0.0e+00 1372.1 929 73.7
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 0.0e+00 1367.8 929 72.8
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 1366.3 930 72.7
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 0.0e+00 1365.5 930 73.1
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 0.0e+00 1365.5 929 71.5
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 1365.1 928 73.6
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 1364.0 929 72.2
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 1364.0 928 73.6
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 0.0e+00 1363.2 953 71.6
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 1362.8 929 71.3
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 1360.5 929 71.5
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 1360.5 930 72.2
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 1360.1 930 71.9
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 1359.7 929 71.5
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 1359.4 931 72.0
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 0.0e+00 1358.6 928 73.2
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 1358.6 930 72.4
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 1356.3 928 73.0
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 0.0e+00 1355.9 929 71.9
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 1355.5 928 71.6
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 1354.7 929 71.7
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 0.0e+00 1354.3 928 71.1
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 0.0e+00 1353.2 929 71.5
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 0.0e+00 1352.4 930 70.3
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 1351.7 929 71.9
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 0.0e+00 1350.5 930 71.5
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 1349.3 929 71.8
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 0.0e+00 1347.8 929 71.4
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 1347.4 929 71.7
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 1345.5 928 71.3
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 1345.1 929 71.2
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 1343.9 929 71.5
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 0.0e+00 1343.6 931 71.0
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 1342.4 930 71.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 0.0e+00 1342.4 928 70.8
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 1340.5 927 70.8
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 1339.7 930 70.5
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 1339.7 974 69.9
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 1339.7 930 71.1
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 0.0e+00 1338.6 928 70.7
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 0.0e+00 1338.2 932 70.5
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 1337.8 929 70.7
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 1337.4 929 70.7
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 1336.6 949 70.0
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 1336.2 929 70.7
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 0.0e+00 1336.2 930 70.0
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1335.9 929 70.9
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1335.5 929 70.6
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1335.5 929 70.6
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1335.5 929 70.3
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1335.5 929 70.3
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1334.7 929 70.6
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1334.3 929 70.6
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 1333.5 929 70.5
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 0.0e+00 1333.5 929 70.4
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 1332.8 927 70.4
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 0.0e+00 1332.4 928 69.6
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 0.0e+00 1331.2 930 69.8
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1330.9 929 70.7
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 1330.9 929 70.7
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 1328.5 929 70.7
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 0.0e+00 1327.0 932 69.6
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 1325.5 931 69.7
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 0.0e+00 1325.5 930 70.3
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 0.0e+00 1324.7 929 69.4
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1324.3 929 70.5
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1324.3 929 70.5
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 0.0e+00 1323.5 933 70.5
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 0.0e+00 1323.1 933 69.5
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 1322.8 929 70.2
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 0.0e+00 1322.4 929 69.2
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 1313.9 930 69.1
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 0.0e+00 1313.5 975 66.5
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 1312.4 929 68.8
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 1305.0 928 68.5
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 1303.9 928 68.4
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 0.0e+00 1300.4 929 68.0
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 1298.9 935 69.0
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 1298.5 932 69.2
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 0.0e+00 1293.9 920 68.8
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 1286.9 929 67.8
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 1286.6 929 67.7
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1280.0 936 67.2
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 1280.0 936 67.2
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 1276.2 936 67.4
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 1272.3 936 67.1
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 1270.0 936 67.6
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 1270.0 931 67.5
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 0.0e+00 1226.5 923 64.6
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 1219.1 930 65.1
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1204.9 929 65.6
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1204.1 935 64.1
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 0.0e+00 1203.7 932 63.3
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 0.0e+00 1159.1 856 66.9
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 0.0e+00 1119.8 931 59.3
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 0.0e+00 1110.5 939 59.0
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 0.0e+00 1110.5 847 65.4
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 0.0e+00 1109.0 929 57.2
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 0.0e+00 1107.8 778 71.7
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 0.0e+00 1089.7 961 56.8
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 6.4e-286 987.6 801 61.9
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 8.4e-262 907.5 999 47.8
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 8.1e-257 891.0 653 68.0
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.5e-226 790.4 547 70.9
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 3.7e-193 679.5 955 40.1
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 8.6e-190 668.3 909 40.4
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 3.4e-146 523.5 1125 31.6
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 5.0e-113 413.3 820 32.2
Cpa.g.sc6.250 Carica papaya HOM05D002880 ORTHO05D003450 1.8e-86 325.1 184 81.0
MBI09_g12804_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 1.0e-78 299.3 171 80.7
Atru.chr1.4014 Acer truncatum HOM05D002880 ORTHO05D003450 1.5e-72 278.9 181 71.8
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.8e-54 218.8 198 55.1
Atru.chr1.4015 Acer truncatum HOM05D002880 ORTHO05D003450 9.8e-53 213.0 126 76.2
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 7.0e-51 206.8 197 53.3
COL.COLO4_21944 Corchorus olitorius HOM05D002880 ORTHO05D030896 1.9e-43 182.2 164 58.5
Actinidia00879 Actinidia chinensis HOM05D002880 ORTHO05D003450 2.1e-42 178.7 169 53.3
MBI01_g01265_MAGBIO Magnolia biondii HOM05D000597 ORTHO05D000603 2.7e-34 151.8 90 80.0
Os07g0645100 Oryza sativa ssp. japonica HOM05D002880 ORTHO05D003450 1.8e-30 139.0 82 73.2
Haze_03764 Corylus avellana HOM05D002880 ORTHO05D003450 9.0e-30 136.7 80 78.8
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 3.8e-28 131.3 110 58.2
Cpa.g.sc6.249 Carica papaya HOM05D002880 ORTHO05D003450 1.9e-27 129.0 107 62.6
PGSC0003DMG400003562 Solanum tuberosum HOM05D002880 ORTHO05D003450 2.4e-27 128.6 70 82.9
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 1.6e-18 99.4 65 72.3
Atru.chr1.4016 Acer truncatum HOM05D002880 ORTHO05D052144 9.0e-14 83.6 53 77.4
Actinidia17496 Actinidia chinensis HOM05D002880 ORTHO05D030896 7.9e-10 70.5 54 59.3
Actinidia17492 Actinidia chinensis HOM05D002880 ORTHO05D030896 2.1e-07 62.4 49 59.2
Actinidia22979 Actinidia chinensis HOM05D002880 ORTHO05D054390 3.7e-07 61.6 74 50.0


User provided reference genes

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