Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 0.0e+00 1342.8 714 100.0
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 1.7e-137 494.2 944 37.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 5.3e-131 472.6 922 37.2
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 4.2e-128 463.0 921 36.8
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.7e-121 441.0 934 35.5
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.1e-117 428.3 919 36.3
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.3e-116 424.9 952 34.9
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 6.5e-113 412.5 922 35.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.9e-105 387.1 806 37.3
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 8.4e-105 385.6 853 35.1
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.6e-103 381.3 921 33.1
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.0e-102 378.6 960 34.2
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 6.7e-102 375.9 895 32.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.9e-101 374.4 770 37.3
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 4.3e-101 373.2 707 38.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.8e-100 369.8 766 36.7
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 4.8e-100 369.8 752 38.0
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.8e-100 369.8 687 38.1
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.4e-99 368.2 925 32.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 9.0e-99 365.5 766 36.7
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 5.9e-98 362.8 730 36.4
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.8e-97 360.1 687 39.2
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.4e-96 358.2 667 38.5
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.5e-96 357.5 807 34.1
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 3.2e-96 357.1 780 33.7
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.1e-95 354.4 733 36.4
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 3.6e-95 353.6 736 35.1
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 4.6e-95 353.2 766 34.5
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 5.1e-94 349.7 706 37.5
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 6.7e-94 349.4 920 31.4
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.1e-93 348.6 908 31.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.7e-92 344.7 718 36.4
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.7e-92 344.7 699 40.2
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.2e-92 344.4 699 40.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.8e-92 343.2 897 32.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.8e-91 341.3 675 40.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 3.1e-91 340.5 963 32.3
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 9.1e-91 339.0 1033 30.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 4.5e-90 336.7 720 35.0
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.7e-89 334.7 736 34.4
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.0e-89 333.2 724 34.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.2e-88 330.5 614 38.4
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.2e-88 329.3 619 38.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-86 325.1 619 37.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 2.3e-86 324.3 793 32.9
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 3.0e-86 323.9 767 33.6
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 2.6e-85 320.9 750 33.2
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 7.4e-85 319.3 794 34.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.8e-84 317.4 711 34.0
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.4e-83 315.1 865 32.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.1e-83 313.5 866 31.3
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.2e-82 312.0 757 33.0
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 3.2e-80 303.9 747 32.9
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.0e-79 299.3 636 38.2
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.0e-78 297.0 792 32.2
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.5e-77 295.0 581 35.8
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.3e-77 293.9 595 37.6
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.7e-76 290.4 774 31.8
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.1e-75 287.0 772 32.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.5e-74 283.5 572 38.1
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 4.5e-74 283.5 646 34.4
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 2.9e-73 280.8 760 31.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 6.5e-73 279.6 766 29.6
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.9e-72 278.1 737 31.6
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 7.2e-72 276.2 756 32.3
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.6e-71 273.9 597 36.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.2e-69 268.9 766 30.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 2.6e-69 267.7 760 33.0
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 5.7e-69 266.5 755 32.2
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 5.7e-69 266.5 628 34.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.3e-68 265.4 617 36.0
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.7e-68 263.8 755 32.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 1.1e-67 262.3 625 35.4
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 2.4e-67 261.2 783 28.4
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.9e-65 254.2 560 36.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.9e-64 251.5 855 28.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.6e-63 248.4 721 32.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.8e-60 237.7 620 33.2
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.5e-56 225.3 723 31.3
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.5e-56 225.3 641 30.9
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.3e-54 218.0 708 27.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.2e-54 216.9 604 29.6
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.6e-53 214.5 405 34.8
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 4.4e-53 213.8 712 29.5
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 9.8e-53 212.6 580 35.2
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 9.2e-51 206.1 660 30.2
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.8e-46 191.8 453 33.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.7e-44 185.3 156 58.3
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.9e-40 171.8 543 27.6
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 3.6e-39 167.5 393 31.0
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 9.8e-37 159.5 345 33.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 6.0e-34 150.2 218 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 7.3e-32 143.3 151 47.7
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 5.2e-30 137.1 538 26.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.0e-29 135.2 98 65.3
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.3e-28 132.5 141 46.8
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 4.1e-27 127.5 140 46.4
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 8.6e-25 119.8 145 45.5
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.0e-17 96.3 166 33.7
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 4.8e-15 87.4 81 50.6
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 7.9e-10 70.1 68 44.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.0e-09 69.7 231 27.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.8e-09 68.9 112 34.8
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.3e-09 68.6 152 28.9
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.3e-09 68.6 138 30.4
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 8.7e-09 66.6 87 39.1
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.9e-08 65.5 146 30.1
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.8e-07 61.6 47 59.6


User provided reference genes

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