Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08193 Sapria himalayana HOM05D003114 ORTHO05D003519 7.1e-173 610.5 313 100.0
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 1.1e-101 374.0 266 73.7
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 2.5e-101 372.9 265 73.2
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 1.6e-100 370.2 267 74.2
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 2.1e-100 369.8 280 70.7
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 3.6e-100 369.0 265 71.3
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 4.7e-100 368.6 267 73.0
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 4.7e-100 368.6 265 72.5
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 6.1e-100 368.2 283 69.6
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 1.4e-99 367.1 265 71.3
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.4e-99 367.1 286 68.5
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 1.8e-99 366.7 265 72.8
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 1.8e-99 366.7 265 72.1
Haze_17610 Corylus avellana HOM05D003114 ORTHO05D003519 1.8e-99 366.7 265 72.8
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.8e-99 366.7 265 72.5
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 3.0e-99 365.9 283 68.9
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 4.0e-99 365.5 265 72.5
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 4.0e-99 365.5 265 72.1
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 4.0e-99 365.5 265 71.3
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 4.0e-99 365.5 265 71.3
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 4.0e-99 365.5 265 71.3
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 5.2e-99 365.2 265 72.1
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 8.8e-99 364.4 265 72.1
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 1.2e-98 364.0 265 71.3
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 1.2e-98 364.0 265 71.3
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 1.5e-98 363.6 265 71.3
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 2.0e-98 363.2 265 71.3
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 2.0e-98 363.2 267 71.9
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 2.6e-98 362.8 283 68.9
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 3.4e-98 362.5 265 71.3
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.4e-98 362.5 266 72.2
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 5.7e-98 361.7 265 70.9
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 5.7e-98 361.7 266 72.2
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 7.5e-98 361.3 265 70.6
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 9.8e-98 360.9 265 70.9
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 1.3e-97 360.5 266 71.1
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.7e-97 360.1 266 71.1
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.7e-97 360.1 265 70.6
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.7e-97 360.1 265 70.6
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 1.7e-97 360.1 266 72.2
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 2.2e-97 359.8 265 71.3
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 2.8e-97 359.4 266 71.8
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 3.7e-97 359.0 266 71.8
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 4.8e-97 358.6 266 71.8
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 4.8e-97 358.6 266 71.1
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 6.3e-97 358.2 266 71.1
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 6.3e-97 358.2 273 69.2
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 6.3e-97 358.2 265 70.2
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 8.3e-97 357.8 265 69.8
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 8.3e-97 357.8 266 71.4
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 8.3e-97 357.8 266 71.1
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 4.1e-96 355.5 266 71.1
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 4.1e-96 355.5 266 69.9
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 4.1e-96 355.5 288 66.7
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 5.4e-96 355.1 266 70.7
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 7.0e-96 354.8 266 71.1
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 7.0e-96 354.8 266 70.3
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 9.1e-96 354.4 266 70.7
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 9.1e-96 354.4 266 70.7
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 9.1e-96 354.4 266 70.7
BolC6t35330H Brassica oleracea HOM05D003114 ORTHO05D003519 9.1e-96 354.4 266 70.7
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 9.1e-96 354.4 266 70.7
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 2.0e-95 353.2 269 70.3
Solyc07g025170.3 Solanum lycopersicum HOM05D003114 ORTHO05D003519 2.7e-95 352.8 266 69.9
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 3.5e-95 352.4 266 70.3
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 3.5e-95 352.4 265 70.6
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 3.5e-95 352.4 266 70.3
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 7.7e-95 351.3 267 68.9
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.3e-94 350.5 266 70.3
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 1.7e-94 350.1 284 68.0
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 2.9e-94 349.4 266 69.9
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 5.0e-94 348.6 284 66.9
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 8.6e-94 347.8 267 70.0
Nn6g32175 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.1e-93 347.4 265 69.1
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.5e-93 347.1 266 69.9
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 1.5e-93 347.1 285 65.6
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 1.9e-93 346.7 261 69.3
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 1.9e-93 346.7 266 69.2
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 2.5e-93 346.3 266 68.4
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 7.2e-93 344.7 265 68.7
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 9.5e-93 344.4 259 68.0
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 1.2e-92 344.0 265 68.7
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.6e-92 343.6 266 67.7
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 2.1e-92 343.2 284 65.5
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 2.8e-92 342.8 266 68.4
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 2.8e-92 342.8 266 68.4
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 6.1e-92 341.7 266 67.7
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 6.1e-92 341.7 283 64.3
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 1.0e-91 340.9 261 67.0
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.4e-91 340.5 286 64.7
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 4.0e-91 339.0 283 63.6
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 6.8e-91 338.2 266 67.7
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 4.4e-90 335.5 267 65.9
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 5.7e-90 335.1 266 65.8
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 7.5e-90 334.7 266 67.3
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 7.5e-90 334.7 266 66.9
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 7.5e-90 334.7 266 65.4
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 9.8e-90 334.3 266 65.8
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 9.8e-90 334.3 269 66.2
Lalb_Chr22g0355341 Lupinus albus HOM05D003114 ORTHO05D003519 9.8e-90 334.3 266 66.5
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 9.8e-90 334.3 265 67.5
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 9.8e-90 334.3 265 67.5
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 1.3e-89 334.0 278 65.5
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 1.7e-89 333.6 269 66.2
Psat0s3702g0080 Pisum sativum HOM05D003114 ORTHO05D003519 2.8e-89 332.8 266 65.8
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 3.7e-89 332.4 265 65.7
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 4.9e-89 332.0 266 66.5
VMungo0647G1300 Vigna mungo HOM05D003114 ORTHO05D003519 6.3e-89 331.6 267 65.9
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 8.3e-89 331.3 266 67.3
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 8.3e-89 331.3 265 65.7
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 8.3e-89 331.3 284 64.8
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 1.4e-88 330.5 266 66.2
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 1.8e-88 330.1 284 62.3
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 4.1e-88 328.9 265 66.0
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 7.0e-88 328.2 284 64.1
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 7.0e-88 328.2 269 65.4
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 2.0e-87 326.6 296 61.8
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 2.7e-87 326.2 266 63.9
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 2.7e-87 326.2 263 64.6
Gorai.009G274500 Gossypium raimondii HOM05D003114 ORTHO05D003519 3.5e-87 325.9 267 64.4
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 4.5e-87 325.5 266 64.3
Peaxi162Scf00064g00324 Petunia axillaris HOM05D003114 ORTHO05D003519 4.5e-87 325.5 363 54.3
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 4.5e-87 325.5 265 65.3
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 5.0e-86 322.0 265 66.8
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.6e-86 321.6 267 63.7
SalBow7G0889 Salvia bowleyana HOM05D003114 ORTHO05D003519 6.6e-86 321.6 269 63.9
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.1e-85 320.9 266 63.2
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 1.5e-85 320.5 284 61.6
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 3.3e-85 319.3 262 66.0
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 5.6e-85 318.5 266 65.4
unitig_26.g9826 Utricularia gibba HOM05D003114 ORTHO05D003519 2.1e-84 316.6 284 62.0
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 2.8e-84 316.2 268 64.2
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 2.3e-83 313.2 286 60.5
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 8.9e-83 311.2 280 61.1
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 1.5e-82 310.5 241 66.4
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 2.2e-81 306.6 269 62.8
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 6.4e-81 305.1 269 61.7
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 6.4e-81 305.1 266 60.9
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 1.2e-79 300.8 257 61.9
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 3.9e-78 295.8 266 59.0
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 1.1e-77 294.3 265 58.5
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 4.3e-77 292.4 204 72.5
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 4.3e-77 292.4 265 62.3
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 4.7e-76 288.9 265 57.4
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 8.0e-76 288.1 239 64.0
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 1.1e-75 287.7 265 60.4
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 3.1e-75 286.2 269 57.2
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 5.2e-75 285.4 241 64.3
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 5.2e-75 285.4 241 64.3
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 6.8e-75 285.0 269 56.9
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 1.2e-74 284.3 285 55.8
SEGI_11826 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 1.2e-74 284.3 258 60.9
Gohir.D05G262600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.3e-73 280.8 297 54.5
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 6.4e-73 278.5 246 60.2
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 1.1e-72 277.7 265 59.6
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 7.0e-72 275.0 265 58.1
HPP92_006946 Vanilla planifolia HOM05D003114 ORTHO05D003519 5.6e-69 265.4 265 57.4
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 3.1e-67 259.6 283 53.7
Glyma.14G078400 Glycine max HOM05D003114 ORTHO05D003519 5.6e-61 238.8 191 63.4
CBR_g3845 Chara braunii HOM05D003114 ORTHO05D003519 2.0e-58 230.3 253 51.4
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 2.2e-57 226.9 251 50.2
Pp3c11_16180 Physcomitrium patens HOM05D003114 ORTHO05D003519 1.9e-56 223.8 223 52.5
Pp3c1_15530 Physcomitrium patens HOM05D003114 ORTHO05D003519 5.4e-56 222.2 233 48.1
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.8e-43 180.6 163 57.7
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 2.4e-35 153.7 133 59.4
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.2e-33 147.1 137 58.4
COL.COLO4_26390 Corchorus olitorius HOM05D003114 ORTHO05D003519 2.5e-29 133.7 90 77.8
Ah.02g115920 Amaranthus hybridus HOM05D003114 ORTHO05D003519 9.0e-27 125.2 84 81.0
DCAR_019500 Daucus carota HOM05D003114 ORTHO05D003519 2.9e-25 120.2 92 72.8
Cre09.g392000 Chlamydomonas reinhardtii HOM05D003114 ORTHO05D003519 5.3e-19 99.4 134 40.3
Glyma.09G114700 Glycine max HOM05D003114 ORTHO05D003519 8.8e-14 82.0 142 38.7
Pp3c11_16980 Physcomitrium patens HOM05D003114 ORTHO05D003519 1.5e-13 81.3 95 45.3
Gohir.A11G224300 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.5e-10 71.2 52 67.3
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.0e-09 68.6 52 65.4
Nitab4.5_0002940g0040 Nicotiana tabacum HOM05D003114 ORTHO05D003519 3.8e-09 66.6 52 65.4


User provided reference genes

Program Settings