Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08192 Sapria himalayana HOM05D003114 ORTHO05D003519 7.1e-161 570.5 274 100.0
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 3.3e-81 305.8 231 67.1
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 9.5e-81 304.3 228 67.1
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 9.5e-81 304.3 228 66.2
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 1.2e-80 303.9 228 65.8
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 2.1e-80 303.1 228 67.5
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 3.6e-80 302.4 229 66.4
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 4.7e-80 302.0 228 66.2
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 4.7e-80 302.0 228 66.2
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 6.2e-80 301.6 232 65.9
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 6.2e-80 301.6 228 66.2
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 6.2e-80 301.6 230 66.5
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 8.0e-80 301.2 228 65.4
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 1.4e-79 300.4 230 66.1
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 1.4e-79 300.4 229 65.5
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 1.4e-79 300.4 228 65.8
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 2.3e-79 299.7 228 66.2
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.1e-79 299.3 228 65.8
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 5.2e-79 298.5 228 66.2
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 5.2e-79 298.5 228 65.4
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 6.8e-79 298.1 229 65.9
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 6.8e-79 298.1 229 65.1
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 6.8e-79 298.1 228 65.8
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 6.8e-79 298.1 229 65.1
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 8.9e-79 297.7 228 64.5
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 8.9e-79 297.7 228 65.8
Haze_17610 Corylus avellana HOM05D003114 ORTHO05D003519 1.2e-78 297.4 228 65.8
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 1.2e-78 297.4 230 65.2
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 1.2e-78 297.4 229 64.6
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 1.2e-78 297.4 228 65.8
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 1.5e-78 297.0 229 65.1
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 1.5e-78 297.0 229 65.1
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 1.5e-78 297.0 229 65.1
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.0e-78 296.6 229 65.1
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 2.6e-78 296.2 229 65.1
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 3.4e-78 295.8 228 65.8
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 3.4e-78 295.8 229 65.1
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 3.4e-78 295.8 228 67.1
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 3.4e-78 295.8 231 64.1
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 3.4e-78 295.8 228 65.8
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 4.4e-78 295.4 229 64.6
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 4.4e-78 295.4 228 66.2
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 4.4e-78 295.4 230 65.2
BolC6t35330H Brassica oleracea HOM05D003114 ORTHO05D003519 5.8e-78 295.0 228 65.4
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 5.8e-78 295.0 228 67.1
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 1.3e-77 293.9 228 64.9
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 1.3e-77 293.9 228 66.7
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 1.3e-77 293.9 236 64.0
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 2.2e-77 293.1 228 65.8
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 2.9e-77 292.7 228 64.9
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 2.9e-77 292.7 228 65.4
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 3.7e-77 292.4 229 64.6
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 3.7e-77 292.4 228 65.4
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 4.9e-77 292.0 228 64.5
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 4.9e-77 292.0 228 64.5
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 4.9e-77 292.0 228 64.9
Peaxi162Scf00064g00324 Petunia axillaris HOM05D003114 ORTHO05D003519 4.9e-77 292.0 228 64.0
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 1.1e-76 290.8 229 65.1
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 1.1e-76 290.8 230 65.7
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.4e-76 290.4 231 64.1
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 1.4e-76 290.4 228 64.9
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.4e-76 290.4 231 64.1
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 1.9e-76 290.0 228 64.5
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 1.9e-76 290.0 228 63.6
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 2.4e-76 289.7 228 63.6
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 2.4e-76 289.7 231 63.6
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 2.4e-76 289.7 231 63.6
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 3.2e-76 289.3 228 64.9
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 4.1e-76 288.9 229 63.8
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 5.4e-76 288.5 228 63.2
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 7.0e-76 288.1 228 64.5
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 7.0e-76 288.1 231 64.5
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 9.2e-76 287.7 229 64.6
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.2e-75 287.3 230 64.3
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 1.6e-75 287.0 228 63.6
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 1.6e-75 287.0 228 63.6
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 3.5e-75 285.8 228 62.7
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 3.5e-75 285.8 230 63.0
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 4.6e-75 285.4 228 63.2
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 6.0e-75 285.0 228 63.6
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 7.8e-75 284.6 230 63.0
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 7.8e-75 284.6 229 62.9
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 1.0e-74 284.3 228 63.2
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.0e-74 284.3 229 64.2
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 1.3e-74 283.9 230 63.5
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 2.3e-74 283.1 230 63.0
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 2.3e-74 283.1 228 61.8
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 3.0e-74 282.7 229 62.4
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 3.0e-74 282.7 230 63.5
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 3.0e-74 282.7 228 63.2
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 3.9e-74 282.3 228 62.7
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 6.6e-74 281.6 228 61.4
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 8.6e-74 281.2 230 64.3
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.5e-73 280.4 228 62.3
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.5e-73 279.6 230 63.0
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 2.5e-73 279.6 228 61.8
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 4.3e-73 278.9 229 62.9
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 4.3e-73 278.9 230 62.6
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 4.3e-73 278.9 229 63.3
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 4.3e-73 278.9 233 60.5
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 7.3e-73 278.1 230 61.7
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 1.1e-71 274.2 229 61.1
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 1.4e-71 273.9 229 61.1
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 4.0e-71 272.3 230 61.3
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 4.0e-71 272.3 228 58.8
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 6.8e-71 271.6 230 61.7
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 8.9e-71 271.2 233 60.1
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 4.4e-70 268.9 228 59.6
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 4.4e-70 268.9 228 59.6
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 1.7e-69 266.9 228 57.5
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.7e-69 266.9 233 57.1
Nn6g32175 Nelumbo nucifera HOM05D003114 ORTHO05D003519 2.9e-69 266.2 229 60.3
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 3.7e-69 265.8 230 56.1
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 1.4e-68 263.8 228 57.0
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 1.9e-68 263.5 228 59.6
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 1.2e-67 260.8 191 67.0
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 1.2e-67 260.8 228 58.3
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 2.7e-67 259.6 228 58.3
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 2.7e-67 259.6 228 56.6
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 2.7e-67 259.6 228 56.6
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 2.3e-66 256.5 228 57.5
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 3.9e-66 255.8 229 58.1
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 6.6e-66 255.0 229 57.6
unitig_26.g9826 Utricularia gibba HOM05D003114 ORTHO05D003519 1.9e-65 253.4 229 57.2
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 3.3e-65 252.7 248 53.6
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 4.3e-65 252.3 229 57.6
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 5.6e-65 251.9 228 57.5
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 1.6e-64 250.4 228 61.0
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.1e-64 250.0 249 52.6
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 4.7e-64 248.8 229 58.5
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 8.1e-64 248.1 253 53.0
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 3.1e-63 246.1 231 57.6
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.8e-63 245.0 237 55.7
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 6.8e-63 245.0 233 54.9
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 3.4e-62 242.7 228 55.7
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 2.7e-59 233.0 234 52.6
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 1.3e-58 230.7 228 53.1
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 1.5e-57 227.3 182 62.6
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 5.6e-57 225.3 228 51.3
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 7.3e-57 224.9 231 51.5
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.4e-55 220.7 228 50.4
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 2.4e-55 219.9 229 51.5
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 2.4e-55 219.9 232 53.9
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 6.9e-55 218.4 172 63.4
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.9e-53 213.0 196 57.7
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 4.2e-52 209.1 229 51.1
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 5.4e-52 208.8 231 47.2
SalBow7G0889 Salvia bowleyana HOM05D003114 ORTHO05D003519 3.0e-50 203.0 228 46.5
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.1e-47 194.5 239 48.5
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.1e-47 194.5 239 48.5
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 1.7e-45 187.2 230 43.9
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 2.4e-44 183.3 228 45.6
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 2.7e-43 179.9 228 44.3
HPP92_006946 Vanilla planifolia HOM05D003114 ORTHO05D003519 8.7e-42 174.9 206 47.6
Psat0s2723g0120 Pisum sativum HOM05D003114 ORTHO05D003519 1.9e-41 173.7 168 56.0
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 4.8e-40 169.1 228 43.4
Pp3c1_15530 Physcomitrium patens HOM05D003114 ORTHO05D003519 4.2e-36 156.0 223 41.7
Glyma.09G114700 Glycine max HOM05D003114 ORTHO05D003519 9.3e-36 154.8 130 62.3
Lsat_1_v5_gn_4_122980 Lactuca sativa HOM05D003114 ORTHO05D003519 1.6e-35 154.1 185 45.4
Pp3c11_16180 Physcomitrium patens HOM05D003114 ORTHO05D003519 2.5e-33 146.7 232 39.2
SEGI_11826 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 3.7e-32 142.9 153 52.9
CBR_g3845 Chara braunii HOM05D003114 ORTHO05D003519 1.1e-31 141.4 243 34.6
MBI19_g06118_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 1.1e-31 141.4 142 55.6
VMungo1061G0001 Vigna mungo HOM05D003114 ORTHO05D003519 1.4e-31 141.0 117 61.5
CBR_g48206 Chara braunii HOM05D003114 ORTHO05D003519 3.4e-30 136.3 232 35.3
VMungo1309G1264 Vigna mungo HOM05D003114 ORTHO05D003519 1.9e-28 130.6 99 61.6
Gohir.D05G262600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 3.9e-26 122.9 139 51.1
Gorai.009G274500 Gossypium raimondii HOM05D003114 ORTHO05D003519 8.7e-26 121.7 139 51.1
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 2.2e-24 117.1 228 34.2
VMungo0540G2521 Vigna mungo HOM05D003114 ORTHO05D003519 9.0e-23 111.7 100 52.0
SEGI_35902 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 1.0e-18 98.2 78 61.5
Psat5g144280 Pisum sativum HOM05D003114 ORTHO05D003519 7.4e-17 92.0 76 64.5
RcHm_v2.0_Chr6g0261041 Rosa chinensis HOM05D003114 ORTHO05D003519 2.8e-16 90.1 92 47.8
Medtr3g082900 Medicago truncatula HOM05D003114 ORTHO05D003519 5.9e-14 82.4 78 59.0
MBI04_g37463_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 2.2e-13 80.5 59 61.0
CARHR037190 Cardamine hirsuta HOM05D003114 ORTHO05D003519 1.1e-12 78.2 78 53.8
CARHR037170 Cardamine hirsuta HOM05D003114 ORTHO05D003519 2.0e-09 67.4 58 58.6
Lsat_1_v5_gn_7_51480 Lactuca sativa HOM05D003114 ORTHO05D003519 2.4e-07 60.5 103 39.8


User provided reference genes

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