Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07567 Sapria himalayana HOM05D001092 ORTHO05D000923 2.6e-44 181.8 99 100.0
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 1.4e-21 106.3 96 60.4
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 2.3e-21 105.5 96 59.4
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 3.1e-21 105.1 96 62.5
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 6.8e-21 104.0 96 59.4
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 7.5e-20 100.5 95 56.8
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 6.4e-19 97.4 96 56.2
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 1.9e-18 95.9 96 55.2
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 2.4e-18 95.5 95 57.9
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 5.4e-18 94.4 96 55.2
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 9.2e-18 93.6 96 55.2
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 1.2e-17 93.2 98 51.0
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 6.0e-17 90.9 95 51.6
CiPaw.12G058300 Carya illinoinensis HOM05D001092 ORTHO05D000923 7.8e-17 90.5 96 53.1
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 7.8e-17 90.5 96 56.2
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 7.8e-17 90.5 96 55.2
Rhsim11G0008300 Rhododendron simsii HOM05D001092 ORTHO05D000923 7.8e-17 90.5 96 53.1
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.0e-16 90.1 95 51.6
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 1.0e-16 90.1 96 55.2
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 1.3e-16 89.7 99 54.5
QL12p007921 Quercus lobata HOM05D001092 ORTHO05D000923 1.7e-16 89.4 112 50.0
Ah.12g053800 Amaranthus hybridus HOM05D001092 ORTHO05D000923 2.3e-16 89.0 95 51.6
SHI34955 Sapria himalayana HOM05D000024 ORTHO05D000007 2.3e-16 89.0 68 73.5
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 3.0e-16 88.6 93 54.8
CSS0002593 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 3.9e-16 88.2 96 52.1
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 6.6e-16 87.4 96 54.2
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 8.6e-16 87.0 96 54.2
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 8.6e-16 87.0 94 50.0
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 1.1e-15 86.7 96 52.1
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 1.1e-15 86.7 98 52.0
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 1.1e-15 86.7 98 52.0
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 1.9e-15 85.9 98 52.0
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 1.9e-15 85.9 98 52.0
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 2.5e-15 85.5 98 51.0
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 5.6e-15 84.3 95 48.4
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 5.6e-15 84.3 98 51.0
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 5.6e-15 84.3 98 51.0
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 5.6e-15 84.3 94 50.0
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 5.6e-15 84.3 94 51.1
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 7.3e-15 84.0 95 51.6
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 7.3e-15 84.0 100 52.0
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 9.5e-15 83.6 98 51.0
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 9.5e-15 83.6 95 52.6
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.2e-14 83.2 94 50.0
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 1.2e-14 83.2 98 50.0
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.6e-14 82.8 94 48.9
Oeu033911.2 Olea europaea HOM05D001092 ORTHO05D000923 1.6e-14 82.8 96 50.0
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.1e-14 82.4 98 49.0
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 2.1e-14 82.4 94 48.9
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.8e-14 82.0 95 49.5
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.8e-14 82.0 95 49.5
Gohir.D08G181600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 4.7e-14 81.3 95 49.5
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 6.2e-14 80.9 96 52.1
Ca_30454_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 6.2e-14 80.9 96 52.1
Lj2P251T20 Lonicera japonica HOM05D001092 ORTHO05D000923 1.1e-13 80.1 99 48.5
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 1.1e-13 80.1 102 47.1
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 1.1e-13 80.1 99 49.5
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 1.1e-13 80.1 99 51.5
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 1.1e-13 80.1 94 47.9
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.4e-13 79.7 95 50.5
Solyc08g077500.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 1.4e-13 79.7 98 46.9
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 1.4e-13 79.7 98 46.9
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.8e-13 79.3 95 49.5
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.3e-13 79.0 95 49.5
ClCG09G012520 Citrullus lanatus HOM05D001092 ORTHO05D000923 3.1e-13 78.6 93 50.5
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 4.0e-13 78.2 93 49.5
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 4.0e-13 78.2 101 49.5
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 4.0e-13 78.2 98 48.0
VMungo1215G1951 Vigna mungo HOM05D001092 ORTHO05D000923 4.0e-13 78.2 96 51.0
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 5.2e-13 77.8 99 49.5
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 5.2e-13 77.8 99 49.5
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 5.2e-13 77.8 93 49.5
Nitab4.5_0006135g0030 Nicotiana tabacum HOM05D001092 ORTHO05D000923 6.8e-13 77.4 98 48.0
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 6.8e-13 77.4 99 50.5
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 8.9e-13 77.0 97 49.5
Gohir.A03G003300 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.2e-12 76.6 95 47.4
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 1.5e-12 76.3 93 48.4
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 2.0e-12 75.9 96 47.9
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 2.6e-12 75.5 99 49.5
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 4.4e-12 74.7 98 45.9
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 7.5e-12 73.9 97 48.5
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 9.9e-12 73.6 94 47.9
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.7e-11 72.8 95 47.4
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 2.2e-11 72.4 96 44.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.9e-11 72.0 40 87.5
Migut.E00810 Erythranthe guttata HOM05D001092 ORTHO05D000923 3.7e-11 71.6 96 43.8
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 6.4e-11 70.9 96 43.8
HPP92_014877 Vanilla planifolia HOM05D001092 ORTHO05D000923 8.3e-11 70.5 93 43.0
HPP92_014923 Vanilla planifolia HOM05D001092 ORTHO05D000923 2.4e-10 68.9 97 42.3
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 3.2e-10 68.6 96 47.9
SHI35260 Sapria himalayana HOM05D000558 ORTHO05D001857 7.1e-10 67.4 41 78.0
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 9.2e-10 67.0 105 41.0
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 1.6e-09 66.2 94 45.7
Eucgr.D02142 Eucalyptus grandis HOM05D001092 ORTHO05D000923 1.3e-08 63.2 94 44.7
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.7e-08 62.8 118 37.3
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 1.7e-08 62.8 99 42.4
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 2.3e-08 62.4 101 37.6
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.3e-08 62.4 112 36.6
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.3e-08 62.4 112 36.6
SHI39113 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-08 62.4 41 65.9
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 3.0e-08 62.0 101 41.6
Zm00001eb390790 Zea mays HOM05D001092 ORTHO05D000923 8.6e-08 60.5 95 43.2
Cpa.g.sc98.50 Carica papaya HOM05D001092 ORTHO05D000923 7.3e-07 57.4 65 47.7
SGA_v2.0_scaffold20G09243 Striga asiatica HOM05D001092 ORTHO05D000923 2.8e-06 55.5 89 41.6


User provided reference genes

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