Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 7.4e-124 447.2 222 100.0
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.9e-43 179.5 145 64.1
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.9e-43 179.5 145 64.1
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 3.7e-43 179.1 146 63.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.7e-43 179.1 145 64.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 8.3e-43 177.9 146 63.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.1e-42 177.6 121 71.9
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 1.1e-42 177.6 147 63.9
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.4e-42 177.2 145 64.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 1.9e-42 176.8 145 64.1
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 1.9e-42 176.8 145 64.1
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 3.2e-42 176.0 145 62.1
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.2e-42 176.0 145 64.1
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 3.2e-42 176.0 145 62.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 3.2e-42 176.0 145 64.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 4.1e-42 175.6 146 63.0
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.1e-42 175.6 131 67.9
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 4.1e-42 175.6 145 64.1
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 5.4e-42 175.3 145 61.4
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 5.4e-42 175.3 145 62.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 5.4e-42 175.3 145 62.1
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 5.4e-42 175.3 149 60.4
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 7.0e-42 174.9 145 62.1
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 7.0e-42 174.9 132 65.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 9.2e-42 174.5 131 66.4
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 9.2e-42 174.5 147 62.6
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 9.2e-42 174.5 145 62.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 9.2e-42 174.5 119 70.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 9.2e-42 174.5 145 62.1
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 1.2e-41 174.1 121 71.1
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 1.2e-41 174.1 145 63.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 1.2e-41 174.1 147 59.9
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.2e-41 174.1 147 60.5
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.6e-41 173.7 123 70.7
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.6e-41 173.7 117 72.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.6e-41 173.7 146 61.6
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.0e-41 173.3 145 62.1
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.0e-41 173.3 119 70.6
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.0e-41 173.3 145 62.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.0e-41 173.3 149 60.4
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 2.7e-41 172.9 147 59.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 2.7e-41 172.9 145 62.1
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 2.7e-41 172.9 145 61.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 3.5e-41 172.6 119 71.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 4.6e-41 172.2 147 60.5
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 4.6e-41 172.2 123 67.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 4.6e-41 172.2 145 61.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 6.0e-41 171.8 145 61.4
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 7.8e-41 171.4 145 61.4
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 7.8e-41 171.4 119 69.7
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.8e-41 171.4 131 64.9
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 7.8e-41 171.4 120 70.8
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 7.8e-41 171.4 145 61.4
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.0e-40 171.0 145 62.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.0e-40 171.0 122 69.7
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.3e-40 170.6 119 70.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.3e-40 169.9 121 67.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 3.0e-40 169.5 119 68.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 3.0e-40 169.5 121 68.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 3.0e-40 169.5 145 61.4
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 3.0e-40 169.5 145 61.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 3.0e-40 169.5 144 59.7
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 3.9e-40 169.1 145 61.4
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 5.0e-40 168.7 121 66.9
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 5.0e-40 168.7 121 66.9
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 6.6e-40 168.3 123 65.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 6.6e-40 168.3 121 66.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 6.6e-40 168.3 121 66.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 6.6e-40 168.3 120 69.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 6.6e-40 168.3 119 68.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 6.6e-40 168.3 149 58.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 8.6e-40 167.9 121 66.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 8.6e-40 167.9 145 60.0
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 8.6e-40 167.9 145 60.0
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.5e-39 167.2 119 68.9
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.5e-39 167.2 145 60.0
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.5e-39 167.2 120 66.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.9e-39 166.8 133 61.7
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.9e-39 166.8 145 58.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.5e-39 166.4 147 58.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.5e-39 166.4 120 66.7
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.5e-39 166.4 145 59.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 3.3e-39 166.0 119 67.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 4.3e-39 165.6 121 65.3
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 4.3e-39 165.6 133 60.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 4.3e-39 165.6 133 60.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.3e-39 165.6 145 58.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 4.3e-39 165.6 149 57.0
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 4.3e-39 165.6 121 66.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 7.3e-39 164.9 145 57.9
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 9.5e-39 164.5 146 58.9
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-38 164.1 133 59.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 2.1e-38 163.3 133 59.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 2.1e-38 163.3 133 59.4
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.1e-38 163.3 145 57.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.8e-38 162.9 140 60.0
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 2.8e-38 162.9 132 60.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 3.6e-38 162.5 126 64.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 6.2e-38 161.8 121 63.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 8.1e-38 161.4 123 64.2
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 8.1e-38 161.4 121 65.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.1e-37 161.0 146 57.5
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 2.3e-37 159.8 120 64.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 5.2e-37 158.7 145 55.9
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 6.8e-37 158.3 120 64.2
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.2e-36 157.5 119 66.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 3.4e-36 156.0 128 61.7
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 5.8e-36 155.2 104 72.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.4e-35 151.8 123 58.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-34 150.2 157 47.8
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.3e-32 143.3 123 56.1
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.9e-32 142.5 123 53.7
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.5e-31 140.6 125 52.0
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.8e-29 133.7 136 53.7
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.3e-27 127.5 105 58.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.1e-26 124.4 86 70.9
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 1.9e-26 123.6 112 58.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.2e-26 122.9 133 51.1
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.4e-26 122.1 84 73.8
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 1.2e-22 110.9 79 67.1
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 6.2e-22 108.6 84 61.9
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.8e-19 99.4 88 55.7
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.7e-17 93.2 123 39.0
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.9e-11 73.2 86 46.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.8e-11 72.8 114 31.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.6e-09 65.9 57 54.4
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-08 64.3 42 69.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.8e-08 63.9 118 34.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.6e-07 58.9 75 45.3


User provided reference genes

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