Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 0.0e+00 1174.5 584 100.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 6.3e-90 335.9 580 38.8
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 1.4e-89 334.7 594 39.6
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 4.1e-89 333.2 587 39.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.4e-86 324.7 557 38.2
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 6.1e-85 319.3 587 38.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 5.1e-84 316.2 555 38.9
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 6.7e-84 315.8 540 39.6
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 6.7e-84 315.8 514 39.9
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.5e-83 314.7 593 37.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 2.0e-80 304.3 557 37.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 2.0e-80 304.3 546 39.0
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 3.5e-80 303.5 555 36.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.9e-80 302.8 563 37.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 1.0e-79 302.0 517 37.7
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 1.7e-79 301.2 517 38.3
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.9e-79 300.4 519 38.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 8.5e-79 298.9 514 38.5
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 1.1e-78 298.5 515 39.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 4.2e-78 296.6 514 39.3
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 7.2e-78 295.8 537 37.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.2e-77 295.0 504 38.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 1.6e-77 294.7 515 38.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 4.7e-77 293.1 556 36.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.8e-76 291.2 518 38.8
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 1.8e-76 291.2 513 37.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.8e-76 291.2 508 37.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 2.3e-76 290.8 513 36.6
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.3e-76 290.8 517 38.5
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 3.0e-76 290.4 567 36.7
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 5.2e-76 289.7 567 36.3
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.8e-76 288.9 513 37.4
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-75 288.5 513 37.0
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.1e-75 288.5 513 37.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.1e-75 288.5 570 35.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.5e-75 288.1 582 34.9
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.0e-75 287.7 514 36.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.6e-75 287.3 556 36.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.6e-75 287.3 552 36.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 4.4e-75 286.6 536 36.8
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 7.5e-75 285.8 545 35.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 9.7e-75 285.4 403 44.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 9.7e-75 285.4 515 36.1
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-74 285.0 541 36.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.7e-74 284.6 576 35.6
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 2.2e-74 284.3 507 37.9
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 2.2e-74 284.3 629 34.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 4.8e-74 283.1 522 36.2
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.3e-74 282.7 516 37.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 6.3e-74 282.7 445 41.8
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 6.3e-74 282.7 515 38.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-73 282.0 513 36.8
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.1e-73 282.0 516 37.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.4e-73 281.6 507 37.9
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-73 280.8 563 36.1
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 4.1e-73 280.0 538 35.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 7.0e-73 279.3 573 33.7
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 9.1e-73 278.9 507 37.9
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 9.1e-73 278.9 564 34.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 1.2e-72 278.5 544 35.1
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 1.6e-72 278.1 544 36.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 2.6e-72 277.3 514 35.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 3.5e-72 276.9 510 36.5
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 7.7e-72 275.8 565 35.9
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 7.7e-72 275.8 503 36.8
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.7e-71 274.6 463 41.3
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 2.2e-71 274.2 520 36.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.2e-71 274.2 443 40.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 8.5e-71 272.3 522 36.4
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 8.5e-71 272.3 515 35.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.2e-70 270.0 443 40.0
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 9.4e-70 268.9 505 35.6
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.6e-69 268.1 402 42.5
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 3.6e-69 266.9 516 35.9
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 5.2e-68 263.1 536 34.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 6.8e-68 262.7 465 38.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 8.8e-68 262.3 513 33.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.2e-67 261.9 438 39.0
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.2e-67 261.9 558 35.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 2.0e-67 261.2 444 39.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 5.7e-67 259.6 505 34.7
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 4.8e-66 256.5 550 33.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 4.8e-66 256.5 530 35.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 6.3e-66 256.1 565 33.5
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 6.3e-66 256.1 503 35.0
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 6.3e-66 256.1 540 35.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 2.4e-65 254.2 519 34.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-65 253.8 546 33.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 3.1e-65 253.8 546 33.7
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 4.1e-65 253.4 583 33.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 9.1e-65 252.3 519 34.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-64 251.1 519 34.3
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.5e-64 250.0 566 33.2
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 4.5e-64 250.0 555 33.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 1.3e-63 248.4 497 34.6
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 3.8e-63 246.9 515 35.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 3.8e-63 246.9 517 33.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 5.0e-63 246.5 503 34.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 8.5e-63 245.7 550 33.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.5e-62 245.0 548 33.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-61 241.9 548 33.2
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 2.1e-61 241.1 449 37.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.1e-61 241.1 555 32.4
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 5.4e-57 226.5 515 32.6
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.5e-54 217.6 345 40.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.4e-51 206.8 540 30.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.9e-50 203.4 514 30.4
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.1e-49 202.2 428 34.6
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 4.1e-49 200.3 555 31.4
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 6.4e-42 176.4 407 33.4
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.2e-41 172.6 405 32.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.2e-40 172.2 496 30.4
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.3e-38 164.1 306 38.2
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.1e-37 161.4 347 35.4
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 5.8e-35 153.3 317 36.0
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 8.6e-31 139.4 392 29.3
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.9e-30 138.3 317 31.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.3e-26 125.6 419 25.5
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.7e-26 124.0 374 30.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.2e-24 119.0 336 30.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 7.8e-24 116.3 420 26.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.7e-23 115.2 469 27.9
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.3e-23 114.8 330 31.5
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 5.1e-23 113.6 130 46.2
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.8e-20 105.1 110 50.0
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.6e-16 90.5 102 49.0
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.1e-12 79.3 131 35.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.4e-12 78.2 217 29.5
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-09 68.9 189 33.3


User provided reference genes

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