Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 7.3e-130 467.2 235 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 1.3e-22 110.9 95 60.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.3e-22 110.9 95 61.1
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.3e-22 110.2 95 60.0
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 8.6e-22 108.2 95 61.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-21 107.1 94 60.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 1.9e-21 107.1 95 60.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.9e-21 107.1 95 58.9
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.9e-21 107.1 95 60.0
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 2.5e-21 106.7 104 59.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.3e-21 105.9 95 57.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 4.3e-21 105.9 95 60.0
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 5.6e-21 105.5 94 59.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 5.6e-21 105.5 95 57.9
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 5.6e-21 105.5 95 60.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 7.3e-21 105.1 95 58.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 9.5e-21 104.8 95 57.9
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-20 104.4 95 56.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-20 104.4 95 56.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.1e-20 103.6 95 55.8
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.1e-20 103.6 94 59.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.1e-20 103.6 95 60.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 2.1e-20 103.6 95 57.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.8e-20 103.2 95 57.9
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 2.8e-20 103.2 95 58.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 3.6e-20 102.8 95 56.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 3.6e-20 102.8 95 56.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 4.7e-20 102.4 95 54.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 4.7e-20 102.4 95 56.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 6.1e-20 102.1 95 57.9
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 6.1e-20 102.1 95 54.7
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.0e-19 101.3 95 55.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 1.0e-19 101.3 95 55.8
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 1.4e-19 100.9 95 56.8
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-19 100.9 95 55.8
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.4e-19 100.9 95 55.8
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.8e-19 100.5 95 55.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.3e-19 100.1 95 56.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 2.3e-19 100.1 95 57.9
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 3.0e-19 99.8 95 56.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 3.0e-19 99.8 95 55.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 3.0e-19 99.8 95 54.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.0e-19 99.4 95 55.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 4.0e-19 99.4 95 54.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 4.0e-19 99.4 95 55.8
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 4.0e-19 99.4 95 56.8
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 55.8
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 55.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 55.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 55.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 56.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 55.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 53.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 53.7
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.2e-19 99.0 95 53.7
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 5.2e-19 99.0 104 54.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 6.8e-19 98.6 95 55.8
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 6.8e-19 98.6 95 55.8
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 6.8e-19 98.6 95 54.7
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 8.9e-19 98.2 95 54.7
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 8.9e-19 98.2 95 54.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 8.9e-19 98.2 95 54.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 1.2e-18 97.8 93 55.9
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-18 97.8 95 54.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.2e-18 97.8 95 54.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 1.2e-18 97.8 95 54.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-18 97.4 95 54.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.5e-18 97.4 95 54.7
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 1.5e-18 97.4 95 55.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 1.5e-18 97.4 95 54.7
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.5e-18 97.4 95 54.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.0e-18 97.1 95 56.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-18 97.1 95 54.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-18 97.1 95 54.7
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.6e-18 96.7 95 53.7
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.6e-18 96.7 95 54.7
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.4e-18 96.3 95 52.6
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 3.4e-18 96.3 95 53.7
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.4e-18 96.3 95 53.7
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 3.4e-18 96.3 95 53.7
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 4.4e-18 95.9 95 53.7
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 7.5e-18 95.1 95 54.7
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 7.5e-18 95.1 103 54.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 9.8e-18 94.7 95 52.6
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 9.8e-18 94.7 95 54.7
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 9.8e-18 94.7 95 53.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.3e-17 94.4 95 52.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.2e-17 93.6 115 48.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 2.2e-17 93.6 95 52.6
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 2.9e-17 93.2 95 51.6
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 2.9e-17 93.2 95 53.7
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.9e-17 92.4 95 54.7
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.9e-17 92.4 95 51.6
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 6.4e-17 92.0 95 52.6
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 8.3e-17 91.7 95 51.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 8.3e-17 91.7 98 49.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 8.3e-17 91.7 95 51.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 8.3e-17 91.7 95 51.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 8.3e-17 91.7 95 51.6
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 8.3e-17 91.7 93 52.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.8e-16 90.5 115 46.1
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 3.2e-16 89.7 98 50.0
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 3.2e-16 89.7 108 49.1
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.1e-16 89.4 94 54.3
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 7.0e-16 88.6 93 50.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 7.0e-16 88.6 115 46.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 7.0e-16 88.6 95 49.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 9.2e-16 88.2 104 48.1
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 7.8e-15 85.1 95 48.4
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 1.3e-14 84.3 95 48.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 3.0e-14 83.2 95 50.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 3.9e-14 82.8 95 50.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.1e-13 81.3 95 42.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.2e-12 77.8 95 48.4
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.6e-12 77.4 95 44.2
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.2e-12 75.5 95 42.1
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.8e-11 72.0 95 38.9
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.8e-11 72.0 95 42.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.8e-10 68.9 95 38.9
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 8.3e-09 65.1 93 45.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.4e-08 63.5 95 36.8
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 9.2e-08 61.6 84 45.2


User provided reference genes

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