Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06091 Sapria himalayana HOM05D003159 ORTHO05D003780 5.1e-162 574.3 284 100.0
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 2.1e-75 286.6 176 76.1
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 3.1e-74 282.7 172 77.3
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 3.1e-74 282.7 195 70.3
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 8.9e-74 281.2 194 69.6
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 3.4e-73 279.3 179 72.6
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 3.4e-73 279.3 195 69.7
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 4.4e-73 278.9 194 69.1
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 5.8e-73 278.5 172 76.7
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.8e-73 278.5 186 69.9
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 5.8e-73 278.5 175 72.6
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 9.9e-73 277.7 192 68.2
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 9.9e-73 277.7 194 68.0
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 9.9e-73 277.7 197 67.5
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 9.9e-73 277.7 197 67.5
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 9.9e-73 277.7 194 70.1
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.7e-72 276.9 174 74.1
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 1.7e-72 276.9 174 74.1
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 1.7e-72 276.9 180 71.7
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 2.2e-72 276.6 179 73.2
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 2.9e-72 276.2 171 73.7
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 2.9e-72 276.2 232 60.3
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 3.7e-72 275.8 194 67.5
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.7e-72 275.8 186 68.8
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 3.7e-72 275.8 194 68.6
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 1.4e-71 273.9 174 71.8
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.4e-71 273.9 186 68.8
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 2.4e-71 273.1 178 71.3
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 2.4e-71 273.1 173 72.8
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.2e-71 272.7 176 71.6
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 3.2e-71 272.7 191 67.0
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 3.2e-71 272.7 174 73.6
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 3.2e-71 272.7 192 67.7
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 3.2e-71 272.7 172 73.8
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 4.1e-71 272.3 192 66.7
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 7.1e-71 271.6 173 72.3
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 9.2e-71 271.2 224 59.4
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 9.2e-71 271.2 173 71.7
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.6e-70 270.4 196 66.3
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 1.6e-70 270.4 171 75.4
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.6e-70 270.4 175 70.3
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 2.1e-70 270.0 171 73.7
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.1e-70 270.0 175 72.0
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.1e-70 270.0 175 69.7
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 2.7e-70 269.6 172 70.9
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.7e-70 269.6 174 71.8
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 3.5e-70 269.2 176 71.0
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.5e-70 269.2 171 72.5
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 3.5e-70 269.2 212 60.8
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 4.6e-70 268.9 232 58.2
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 4.6e-70 268.9 171 73.1
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 6.0e-70 268.5 227 60.4
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.0e-69 267.7 192 65.6
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.3e-69 267.3 171 72.5
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.7e-69 266.9 222 58.1
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.7e-69 266.9 171 71.9
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 2.3e-69 266.5 171 73.1
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 2.3e-69 266.5 197 66.5
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 2.3e-69 266.5 197 66.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.3e-69 266.5 183 68.3
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.0e-69 266.2 190 66.3
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 3.0e-69 266.2 175 69.7
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.1e-69 265.4 171 71.3
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.1e-69 265.4 171 71.3
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 5.1e-69 265.4 172 69.8
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 6.6e-69 265.0 174 70.7
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 6.6e-69 265.0 171 72.5
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 6.6e-69 265.0 170 71.8
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 6.6e-69 265.0 172 70.9
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 1.1e-68 264.2 175 70.3
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.1e-68 264.2 171 71.3
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.5e-68 263.8 171 72.5
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.5e-68 263.8 225 57.8
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.5e-68 263.8 171 72.5
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.9e-68 263.5 171 71.3
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 2.5e-68 263.1 173 71.1
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 4.3e-68 262.3 171 71.9
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 4.3e-68 262.3 238 54.6
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 5.6e-68 261.9 225 57.3
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 5.6e-68 261.9 225 57.3
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.3e-68 261.5 170 71.2
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 9.6e-68 261.2 196 62.8
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 9.6e-68 261.2 197 64.5
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 9.6e-68 261.2 206 60.7
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 1.2e-67 260.8 175 70.3
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 1.2e-67 260.8 174 69.5
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.2e-67 260.8 206 61.2
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 2.1e-67 260.0 171 70.2
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 6.2e-67 258.5 172 70.3
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 6.2e-67 258.5 171 69.0
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 8.1e-67 258.1 171 70.8
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 8.1e-67 258.1 171 70.8
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.1e-66 257.7 174 69.5
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 1.1e-66 257.7 170 71.8
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 1.8e-66 256.9 187 65.2
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 2.4e-66 256.5 171 69.0
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 2.4e-66 256.5 174 66.1
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 2.4e-66 256.5 178 66.3
DCAR_028952 Daucus carota HOM05D003159 ORTHO05D003780 3.1e-66 256.1 171 69.0
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 3.1e-66 256.1 207 58.9
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 5.2e-66 255.4 193 61.7
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 5.2e-66 255.4 178 64.0
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 8.9e-66 254.6 175 66.9
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 8.9e-66 254.6 170 70.6
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.2e-65 254.2 197 62.4
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.2e-65 254.2 178 65.7
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 1.5e-65 253.8 171 68.4
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 2.0e-65 253.4 171 67.8
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 2.0e-65 253.4 196 61.7
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 2.6e-65 253.1 171 66.1
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 3.4e-65 252.7 193 60.6
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 4.4e-65 252.3 172 65.7
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 9.9e-65 251.1 189 60.8
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.3e-64 250.8 173 67.6
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 1.7e-64 250.4 178 62.4
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.7e-64 250.4 194 62.9
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 3.8e-64 249.2 170 67.6
SEGI_17525 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.1e-63 247.7 241 52.3
Haze_20967 Corylus avellana HOM05D003159 ORTHO05D003780 1.4e-63 247.3 196 62.2
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 9.3e-63 244.6 171 63.7
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.3e-61 240.7 167 65.9
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 5.1e-61 238.8 272 46.3
FAN12G4313 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.5e-60 237.3 152 71.1
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.3e-59 234.2 176 59.1
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 4.8e-59 232.3 152 67.8
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.1e-58 231.1 166 63.9
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.4e-58 230.7 182 61.5
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.4e-58 230.7 185 60.5
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 2.4e-58 229.9 169 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 6.4e-56 221.9 186 57.0
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.9e-55 220.3 169 61.5
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 2.1e-54 216.9 169 60.4
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 2.3e-53 213.4 171 61.4
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 3.9e-53 212.6 171 63.2
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.5e-52 209.9 167 57.5
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 6.2e-51 205.3 152 59.9
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 9.9e-49 198.0 152 58.6
FAN20G0704 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.8e-48 196.1 136 65.4
FAN02G3581 Fragaria x ananassa HOM05D001720 ORTHO05D001813 1.4e-47 194.1 136 65.4
TPR.G10778 Trifolium pratense HOM05D003159 ORTHO05D003780 4.6e-46 189.1 121 71.9
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.9e-40 169.9 184 48.9
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.9e-39 167.2 104 72.1
AUR62033001 Chenopodium quinoa HOM05D003159 ORTHO05D044021 4.6e-38 162.5 150 53.3
Nn1g02653 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.3e-37 161.0 107 72.0
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 5.7e-36 155.6 167 48.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 5.7e-36 155.6 106 67.0
Lalb_Chr06g0166711 Lupinus albus HOM05D003159 ORTHO05D003780 2.4e-34 150.2 98 71.4
Lalb_Chr06g0166751 Lupinus albus HOM05D003159 ORTHO05D003780 2.4e-34 150.2 98 71.4
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 2.4e-34 150.2 97 71.1
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 2.0e-33 147.1 167 49.1
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 3.4e-33 146.4 152 46.7
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 3.8e-32 142.9 173 47.4
FAN09G3226 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.9e-31 140.6 104 68.3
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 4.1e-26 122.9 167 42.5
Atru.chr2.868 Acer truncatum HOM05D003159 ORTHO05D003780 3.8e-24 116.3 99 58.6
Nitab4.5_0000261g0140 Nicotiana tabacum HOM05D003159 ORTHO05D003780 7.2e-23 112.1 105 54.3
Lalb_Chr06g0166741 Lupinus albus HOM05D003159 ORTHO05D003780 1.0e-21 108.2 69 68.1
AUR62010228 Chenopodium quinoa HOM05D003159 ORTHO05D003780 4.2e-15 86.3 71 59.2
FAN09G4428 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.7e-11 74.3 61 54.1
RcHm_v2.0_Chr6g0278951 Rosa chinensis HOM05D003159 ORTHO05D003780 6.3e-11 72.4 53 62.3
Nitab4.5_0001462g0060 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.4e-10 70.5 51 62.7
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 4.1e-10 69.7 47 63.8
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 1.6e-09 67.8 51 58.8
RcHm_v2.0_Chr7g0214531 Rosa chinensis HOM05D003159 ORTHO05D003780 4.5e-09 66.2 53 58.5
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 3.8e-08 63.2 38 73.7


User provided reference genes

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