Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 0.0e+00 1115.5 601 100.0
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.3e-34 151.4 436 32.3
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 5.0e-34 150.2 419 31.7
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.3e-33 147.1 341 33.4
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.6e-33 146.7 341 33.4
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 3.6e-32 144.1 659 27.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 8.0e-32 142.9 385 32.5
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.0e-31 142.5 333 31.8
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.1e-31 141.0 449 31.8
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 6.8e-31 139.8 299 35.1
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.0e-30 138.3 503 28.6
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.8e-30 136.7 627 26.3
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 7.5e-30 136.3 288 35.1
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.9e-29 134.4 281 36.3
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.7e-29 134.0 363 32.5
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 4.9e-29 133.7 441 27.9
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 4.9e-29 133.7 324 32.7
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 8.3e-29 132.9 489 28.6
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.1e-28 132.5 396 29.8
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.4e-28 132.1 409 29.6
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.4e-28 131.3 481 29.5
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 3.2e-28 131.0 282 34.0
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.2e-28 131.0 408 29.2
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 4.1e-28 130.6 379 31.7
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 9.2e-28 129.4 622 27.7
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 2.7e-27 127.9 398 31.4
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.0e-27 126.7 443 28.9
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 3.9e-26 124.0 414 29.0
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 4.3e-25 120.6 263 34.6
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 4.3e-25 120.6 389 30.6
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 4.3e-25 120.6 251 36.3
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.1e-24 118.2 470 28.9
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 2.8e-24 117.9 255 33.3
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 6.2e-24 116.7 272 34.9
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 6.2e-24 116.7 454 28.2
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 8.0e-24 116.3 228 33.8
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.1e-23 115.9 456 29.2
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.8e-23 115.2 318 30.2
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.8e-23 115.2 456 29.6
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.3e-23 114.8 283 34.6
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 3.4e-22 110.9 315 30.5
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 4.4e-22 110.5 314 29.6
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.8e-22 110.2 287 31.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 6.4e-21 106.7 314 29.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 8.3e-21 106.3 324 33.0
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.1e-20 105.9 329 29.8
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.1e-20 104.0 284 30.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.1e-20 104.0 651 24.1
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 4.1e-20 104.0 243 33.3
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 5.4e-20 103.6 428 27.1
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 7.0e-20 103.2 228 33.8
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 7.0e-20 103.2 279 32.3
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 7.0e-20 103.2 273 31.1
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.2e-19 102.4 317 29.0
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.2e-19 102.4 273 30.8
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.6e-19 102.1 261 29.5
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.7e-19 101.3 261 29.5
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.5e-19 100.9 313 29.4
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 4.6e-19 100.5 235 33.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.6e-19 100.5 235 33.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.6e-19 100.5 235 33.6
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.0e-19 100.1 356 27.5
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 7.8e-19 99.8 317 29.0
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.0e-18 99.4 307 30.3
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 2.3e-18 98.2 361 29.4
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.0e-18 97.8 235 33.6
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-17 95.9 428 27.3
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.9e-17 95.1 319 28.5
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.5e-17 94.7 446 27.8
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.5e-17 94.7 206 34.5
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 7.3e-17 93.2 401 26.2
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 1.2e-16 92.4 255 33.3
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.6e-16 92.0 255 33.3
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.6e-16 92.0 255 33.3
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.6e-16 92.0 430 24.9
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.6e-16 92.0 327 28.4
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.8e-16 91.3 234 31.2
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 2.8e-16 91.3 256 32.8
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 4.7e-16 90.5 255 32.9
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 4.7e-16 90.5 255 32.9
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 4.7e-16 90.5 255 32.9
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 8.1e-16 89.7 271 29.9
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.1e-15 89.4 252 33.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.1e-15 89.4 325 26.8
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.1e-15 89.4 261 27.6
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.8e-15 88.6 234 30.3
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 3.1e-15 87.8 250 32.8
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.1e-15 87.8 272 29.0
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 4.0e-15 87.4 388 25.3
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 6.8e-15 86.7 324 28.7
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 6.8e-15 86.7 253 32.4
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 1.2e-14 85.9 450 25.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 3.4e-14 84.3 255 32.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 3.4e-14 84.3 117 41.9
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 4.4e-14 84.0 393 26.5
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 9.9e-14 82.8 271 30.3
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 1.3e-13 82.4 414 25.8
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.4e-12 79.0 495 23.8
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.2e-11 75.9 270 28.1
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 4.6e-11 73.9 392 25.3
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.1e-09 69.3 126 38.1
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.1e-09 69.3 50 60.0
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.5e-09 68.9 275 27.6
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 5.6e-09 67.0 283 28.6
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.1e-07 62.8 261 25.3
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.2e-06 59.3 165 29.7
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.5e-06 58.9 228 30.3
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 1.5e-06 58.9 282 27.0
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 2.0e-06 58.5 216 27.3
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.6e-06 58.2 49 57.1


User provided reference genes

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