Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 3.8e-76 288.1 148 100.0
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 4.3e-19 98.6 81 58.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 1.4e-17 93.6 80 56.2
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 1.8e-17 93.2 84 53.6
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 1.8e-17 93.2 84 53.6
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 5.2e-17 91.7 81 54.3
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 6.8e-17 91.3 81 55.6
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.5e-16 90.1 80 52.5
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 2.0e-16 89.7 84 50.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 4.4e-16 88.6 83 48.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 9.9e-16 87.4 85 51.8
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 2.2e-15 86.3 80 52.5
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 3.7e-15 85.5 80 53.8
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 4.9e-15 85.1 84 50.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 4.9e-15 85.1 84 50.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 6.4e-15 84.7 84 50.0
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 8.3e-15 84.3 89 49.4
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 1.1e-14 84.0 84 50.0
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 1.4e-14 83.6 84 47.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 2.4e-14 82.8 84 51.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 2.4e-14 82.8 84 48.8
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 5.4e-14 81.6 75 49.3
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 9.2e-14 80.9 84 46.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 9.2e-14 80.9 84 46.4
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 1.6e-13 80.1 80 52.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.1e-13 79.7 85 48.2
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 2.1e-13 79.7 84 52.4
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.5e-13 79.0 84 45.2
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 3.5e-13 79.0 80 51.2
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 4.6e-13 78.6 84 48.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 6.0e-13 78.2 84 46.4
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 7.8e-13 77.8 92 46.7
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 1.0e-12 77.4 120 37.5
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 1.0e-12 77.4 84 45.2
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.0e-12 77.4 80 51.2
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 1.7e-12 76.6 84 42.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 1.7e-12 76.6 84 41.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 2.3e-12 76.3 89 46.1
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.0e-12 75.9 80 52.5
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 3.0e-12 75.9 83 47.0
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 3.9e-12 75.5 75 48.0
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 3.9e-12 75.5 84 44.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 5.1e-12 75.1 84 41.7
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 5.1e-12 75.1 83 45.8
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 8.6e-12 74.3 84 40.5
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 8.6e-12 74.3 84 40.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 8.6e-12 74.3 83 45.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-11 73.9 84 47.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 1.1e-11 73.9 89 42.7
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.9e-11 73.2 81 44.4
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.5e-11 72.8 85 48.2
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.5e-11 72.8 85 48.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 2.5e-11 72.8 91 45.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 3.3e-11 72.4 125 34.4
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 4.3e-11 72.0 89 44.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 4.3e-11 72.0 85 48.2
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 5.6e-11 71.6 84 40.5
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 5.6e-11 71.6 84 40.5
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 5.6e-11 71.6 84 40.5
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 7.3e-11 71.2 75 42.7
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 9.5e-11 70.9 89 37.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 1.2e-10 70.5 80 42.5
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 2.1e-10 69.7 87 39.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 2.8e-10 69.3 87 40.2
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 2.8e-10 69.3 89 38.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 2.8e-10 69.3 84 41.7
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 6.2e-10 68.2 80 40.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 8.1e-10 67.8 73 45.2
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 1.1e-09 67.4 80 42.5
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 1.8e-09 66.6 82 41.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 1.8e-09 66.6 75 40.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 2.4e-09 66.2 82 41.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 2.4e-09 66.2 82 41.5
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 2.4e-09 66.2 82 41.5
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 2.4e-09 66.2 82 41.5
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 4.0e-09 65.5 80 41.2
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 5.2e-09 65.1 82 42.7
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 6.8e-09 64.7 81 43.2
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 1.5e-08 63.5 82 40.2
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 2.6e-08 62.8 82 39.0
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 2.6e-08 62.8 81 40.7
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 2.6e-08 62.8 84 38.1
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 4.4e-08 62.0 85 37.6
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 1.3e-07 60.5 81 39.5
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 6.4e-07 58.2 84 41.7
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.4e-07 58.2 98 32.7
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 7.1e-06 54.7 108 36.1


User provided reference genes

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