Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05053 Sapria himalayana HOM05D001441 ORTHO05D001332 3.3e-36 154.5 74 100.0
Potri.017G088600 Populus trichocarpa HOM05D001441 ORTHO05D001332 4.2e-15 84.3 58 63.8
Sabra17G0078400 Salix brachista HOM05D001441 ORTHO05D001332 2.1e-14 82.0 59 64.4
Manes.01G100000 Manihot esculenta HOM05D001441 ORTHO05D001332 1.3e-13 79.3 58 58.6
Manes.02G050100 Manihot esculenta HOM05D001441 ORTHO05D001332 1.8e-13 79.0 58 58.6
Potri.004G121100 Populus trichocarpa HOM05D001441 ORTHO05D001332 4.3e-12 74.3 60 58.3
CiPaw.04G013900 Carya illinoinensis HOM05D001441 ORTHO05D001332 5.6e-12 73.9 51 64.7
Haze_14483 Corylus avellana HOM05D001441 ORTHO05D001332 7.4e-12 73.6 58 56.9
QL02p039253 Quercus lobata HOM05D001441 ORTHO05D001332 9.6e-12 73.2 52 55.8
arahy.Tifrunner.gnm1.ann1.ZB99CZ Arachis hypogaea HOM05D001441 ORTHO05D001332 1.3e-11 72.8 60 48.3
MD09G1057600 Malus domestica HOM05D001441 ORTHO05D001332 1.6e-11 72.4 53 62.3
TWI32G0744 Tripterygium wilfordii HOM05D001441 ORTHO05D001332 1.6e-11 72.4 51 58.8
RcHm_v2.0_Chr2g0166941 Rosa chinensis HOM05D001441 ORTHO05D001332 2.1e-11 72.0 58 55.2
MD17G1054500 Malus domestica HOM05D001441 ORTHO05D001332 2.8e-11 71.6 56 57.1
MD09G1057500 Malus domestica HOM05D001441 ORTHO05D001332 8.1e-11 70.1 53 58.5
GSVIVG01011476001 Vitis vinifera HOM05D001441 ORTHO05D001332 8.1e-11 70.1 39 69.2
CANSAT64G1417 Cannabis sativa HOM05D001441 ORTHO05D001332 1.1e-10 69.7 58 55.2
PGR004G0509 Punica granatum HOM05D001441 ORTHO05D001332 1.1e-10 69.7 48 62.5
Thecc.04G088900 Theobroma cacao HOM05D001441 ORTHO05D001332 1.1e-10 69.7 51 56.9
Actinidia01959 Actinidia chinensis HOM05D001441 ORTHO05D001332 3.1e-10 68.2 57 59.6
Cfa007605 Carpinus fangiana HOM05D001441 ORTHO05D001332 3.1e-10 68.2 51 54.9
Ciclev10012929m.g Citrus clementina HOM05D001441 ORTHO05D001332 3.1e-10 68.2 50 56.0
Duzib187G0668 Durio zibethinus HOM05D001441 ORTHO05D001332 3.1e-10 68.2 51 54.9
Hma1.2p1_2073F.1_g313170 Hydrangea macrophylla HOM05D001441 ORTHO05D001332 3.1e-10 68.2 49 61.2
CiPaw.03G021000 Carya illinoinensis HOM05D001441 ORTHO05D001332 5.3e-10 67.4 59 54.2
Migut.H00668 Erythranthe guttata HOM05D001441 ORTHO05D001332 5.3e-10 67.4 43 60.5
Duzib147G0324 Durio zibethinus HOM05D001441 ORTHO05D001332 6.9e-10 67.0 51 54.9
FvH4_6g47771 Fragaria vesca HOM05D001441 ORTHO05D001332 6.9e-10 67.0 39 71.8
FAN02G1582 Fragaria x ananassa HOM05D001441 ORTHO05D001332 9.0e-10 66.6 38 71.1
FAN09G0100 Fragaria x ananassa HOM05D001441 ORTHO05D001332 9.0e-10 66.6 38 71.1
FAN09G0525 Fragaria x ananassa HOM05D001441 ORTHO05D001332 9.0e-10 66.6 38 71.1
Medtr6g013200 Medicago truncatula HOM05D001441 ORTHO05D001332 9.0e-10 66.6 54 50.0
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-09 66.2 39 69.2
Lj4A114G80 Lonicera japonica HOM05D001441 ORTHO05D001332 1.2e-09 66.2 56 53.6
Prupe.3G261600 Prunus persica HOM05D001441 ORTHO05D001332 1.2e-09 66.2 59 50.8
Atru.chr8.355 Acer truncatum HOM05D001441 ORTHO05D001332 1.5e-09 65.9 51 52.9
Dinv33797 Davidia involucrata HOM05D001441 ORTHO05D001332 1.5e-09 65.9 56 53.6
SalBow1G8395 Salvia bowleyana HOM05D001441 ORTHO05D001332 1.5e-09 65.9 66 47.0
Sed0015366 Sechium edule HOM05D001441 ORTHO05D001332 1.5e-09 65.9 38 71.1
CSS0032145 Camellia sinensis var. sinensis HOM05D001441 ORTHO05D001332 2.6e-09 65.1 57 54.4
Lalb_Chr02g0159091 Lupinus albus HOM05D001441 ORTHO05D001332 2.6e-09 65.1 51 56.9
TPR.G26217 Trifolium pratense HOM05D001441 ORTHO05D001332 3.4e-09 64.7 48 56.2
Medtr6g013420 Medicago truncatula HOM05D001441 ORTHO05D001332 4.5e-09 64.3 54 50.0
ClCG10G015480 Citrullus lanatus HOM05D001441 ORTHO05D001332 5.8e-09 63.9 51 56.9
MELO3C009833.2 Cucumis melo HOM05D001441 ORTHO05D001332 5.8e-09 63.9 51 54.9
MSTRG.23910 Avicennia marina HOM05D001441 ORTHO05D001332 7.6e-09 63.5 49 53.1
MSTRG.3342 Avicennia marina HOM05D001441 ORTHO05D001332 7.6e-09 63.5 50 54.0
CsaV3_3G040990 Cucumis sativus L. HOM05D001441 ORTHO05D001332 7.6e-09 63.5 56 51.8
Sc10g0003340 Simmondsia chinensis HOM05D001441 ORTHO05D001332 1.0e-08 63.2 54 57.4
SalBow1G1337 Salvia bowleyana HOM05D001441 ORTHO05D001332 1.3e-08 62.8 43 53.5
Oeu028002.1 Olea europaea HOM05D001441 ORTHO05D001332 1.7e-08 62.4 56 50.0
Lsat_1_v5_gn_4_170061 Lactuca sativa HOM05D001441 ORTHO05D001332 2.2e-08 62.0 39 64.1
Nitab4.5_0000568g0290 Nicotiana tabacum HOM05D001441 ORTHO05D001332 2.2e-08 62.0 48 54.2
Nitab4.5_0001591g0040 Nicotiana tabacum HOM05D001441 ORTHO05D001332 2.2e-08 62.0 48 54.2
Lsat_1_v5_gn_2_88200 Lactuca sativa HOM05D001441 ORTHO05D001332 2.9e-08 61.6 48 54.2
ECA232G0881 Erigeron canadensis HOM05D001441 ORTHO05D001332 3.8e-08 61.2 39 64.1
ECA232G3133 Erigeron canadensis HOM05D001441 ORTHO05D001332 3.8e-08 61.2 39 64.1
Hund13178 Selenicereus undatus HOM05D001441 ORTHO05D001332 3.8e-08 61.2 50 50.0
arahy.Tifrunner.gnm1.ann1.7Y0VRH Arachis hypogaea HOM05D001441 ORTHO05D001332 4.9e-08 60.8 51 52.9
Cc07_g03750 Coffea canephora HOM05D001441 ORTHO05D001332 4.9e-08 60.8 51 54.9
unitig_62.g23439 Utricularia gibba HOM05D001441 ORTHO05D001332 4.9e-08 60.8 46 50.0
CAN.G206.187 Capsicum annuum HOM05D001441 ORTHO05D001332 6.5e-08 60.5 55 49.1
COL.COLO4_12245 Corchorus olitorius HOM05D001441 ORTHO05D001332 6.5e-08 60.5 51 51.0
HanXRQChr09g0264071 Helianthus annuus HOM05D001441 ORTHO05D001332 6.5e-08 60.5 53 50.9
Oeu020662.1 Olea europaea HOM05D001441 ORTHO05D001332 6.5e-08 60.5 39 64.1
PSO063G2127 Papaver somniferum HOM05D001441 ORTHO05D001332 6.5e-08 60.5 57 49.1
Aa31LG11G14180 Aethionema arabicum HOM05D001441 ORTHO05D001332 8.4e-08 60.1 55 43.6
EL10Ac2g03037 Beta vulgaris HOM05D001441 ORTHO05D001332 8.4e-08 60.1 54 46.3
AUR62034459 Chenopodium quinoa HOM05D001441 ORTHO05D001332 8.4e-08 60.1 54 46.3
Phvul.004G032800 Phaseolus vulgaris HOM05D001441 ORTHO05D001332 8.4e-08 60.1 55 47.3
Peaxi162Scf00166g00932 Petunia axillaris HOM05D001441 ORTHO05D001332 1.1e-07 59.7 48 52.1
DCAR_011069 Daucus carota HOM05D001441 ORTHO05D001332 1.4e-07 59.3 57 45.6
Thhalv10014831m.g Eutrema salsugineum HOM05D001441 ORTHO05D001332 1.4e-07 59.3 55 43.6
Sp6g28710 Schrenkiella parvula HOM05D001441 ORTHO05D001332 1.4e-07 59.3 55 43.6
AL9U11630 Arabidopsis lyrata HOM05D001441 ORTHO05D001332 1.9e-07 58.9 51 47.1
AUR62018126 Chenopodium quinoa HOM05D001441 ORTHO05D001332 1.9e-07 58.9 54 44.4
Glyma.13G059500 Glycine max HOM05D001441 ORTHO05D001332 2.5e-07 58.5 51 49.0
vmacro05675 Vaccinium macrocarpon HOM05D001441 ORTHO05D001332 2.5e-07 58.5 54 50.0
Gohir.A11G071100 Gossypium hirsutum HOM05D001441 ORTHO05D001332 3.2e-07 58.2 52 51.9
Gohir.D11G075100 Gossypium hirsutum HOM05D001441 ORTHO05D001332 3.2e-07 58.2 52 51.9
Gorai.007G080700 Gossypium raimondii HOM05D001441 ORTHO05D001332 3.2e-07 58.2 52 51.9
Lalb_Chr21g0318491 Lupinus albus HOM05D001441 ORTHO05D001332 3.2e-07 58.2 51 49.0
Psat1g071320 Pisum sativum HOM05D001441 ORTHO05D001332 3.2e-07 58.2 54 48.1
unitig_52.g17600 Utricularia gibba HOM05D001770 ORTHO05D001822 3.2e-07 58.2 43 53.5
HanXRQChr09g0264061 Helianthus annuus HOM05D001441 ORTHO05D001332 4.2e-07 57.8 39 59.0
BcaC04g24241 Brassica carinata HOM05D001441 ORTHO05D001332 5.5e-07 57.4 51 45.1
A10p23510 Brassica napus HOM05D001441 ORTHO05D001332 5.5e-07 57.4 51 45.1
C09p61740 Brassica napus HOM05D001441 ORTHO05D001332 5.5e-07 57.4 51 45.1
BolC9t59013H Brassica oleracea HOM05D000001 ORTHO05D010108 5.5e-07 57.4 51 45.1
BraA10t44418Z Brassica rapa HOM05D000001 ORTHO05D010108 5.5e-07 57.4 51 45.1
Aa31LG5G12550 Aethionema arabicum HOM05D001441 ORTHO05D001332 7.1e-07 57.0 51 45.1
Oeu000846.1 Olea europaea HOM05D001441 ORTHO05D001332 7.1e-07 57.0 57 52.6
Oeu000847.1 Olea europaea HOM05D001441 ORTHO05D001332 7.1e-07 57.0 57 52.6
Peaxi162Scf00823g00021 Petunia axillaris HOM05D001441 ORTHO05D001332 7.1e-07 57.0 48 50.0
Solyc02g088390.4 Solanum lycopersicum HOM05D001441 ORTHO05D001332 9.3e-07 56.6 48 50.0
Sopen02g033070 Solanum pennellii HOM05D001441 ORTHO05D001332 9.3e-07 56.6 48 50.0
TAR622G0505 Trochodendron aralioides HOM05D001441 ORTHO05D001332 9.3e-07 56.6 56 44.6
Oeu023717.1 Olea europaea HOM05D001441 ORTHO05D001332 1.2e-06 56.2 51 51.0
AT4G12880 Arabidopsis thaliana HOM05D001441 ORTHO05D001332 1.6e-06 55.8 51 43.1
AT5G15350 Arabidopsis thaliana HOM05D001441 ORTHO05D001332 1.6e-06 55.8 55 41.8
A05p44880 Brassica napus HOM05D001441 ORTHO05D001332 1.6e-06 55.8 50 46.0
BraA05t23169Z Brassica rapa HOM05D001441 ORTHO05D001332 1.6e-06 55.8 50 46.0
Carub.0006s1354 Capsella rubella HOM05D001441 ORTHO05D001332 1.6e-06 55.8 55 41.8
PGSC0003DMG400001437 Solanum tuberosum HOM05D001441 ORTHO05D001332 1.6e-06 55.8 48 50.0
BcaB01g05058 Brassica carinata HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
BcaB01g05062 Brassica carinata HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
A03p07120 Brassica napus HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
C03p08110 Brassica napus HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
BolC3t13308H Brassica oleracea HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
BraA03t10034Z Brassica rapa HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 43.6
Nn4g23311 Nelumbo nucifera HOM05D001441 ORTHO05D001332 2.7e-06 55.1 53 47.2
PSO063G7079 Papaver somniferum HOM05D001441 ORTHO05D001332 2.7e-06 55.1 57 45.6
THA.LOC104821013 Tarenaya hassleriana HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 49.1
THA.LOC104822347 Tarenaya hassleriana HOM05D001441 ORTHO05D001332 2.7e-06 55.1 55 45.5
AL6G26230 Arabidopsis lyrata HOM05D001441 ORTHO05D001332 3.5e-06 54.7 51 43.1
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 3.5e-06 54.7 54 48.1
HanXRQChr15g0488411 Helianthus annuus HOM05D001441 ORTHO05D001332 3.5e-06 54.7 60 41.7
Sp3g01060 Schrenkiella parvula HOM05D001441 ORTHO05D001332 3.5e-06 54.7 57 47.4
VMungo0464G2065 Vigna mungo HOM05D001441 ORTHO05D001332 3.5e-06 54.7 55 43.6
Eucgr.I01995 Eucalyptus grandis HOM05D001441 ORTHO05D001332 4.6e-06 54.3 53 47.2
Lj2g0024407 Lotus japonicus HOM05D001441 ORTHO05D001332 4.6e-06 54.3 54 44.4
Nn3g17359 Nelumbo nucifera HOM05D001441 ORTHO05D001332 6.0e-06 53.9 49 51.0
PSO339G1054 Papaver somniferum HOM05D001441 ORTHO05D001332 6.0e-06 53.9 49 49.0
TAR374G0681 Trochodendron aralioides HOM05D001441 ORTHO05D001332 6.0e-06 53.9 56 44.6
Rhsim10G0034800 Rhododendron simsii HOM05D001441 ORTHO05D001332 7.9e-06 53.5 39 53.8


User provided reference genes

Program Settings