Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.5e-68 262.7 130 100.0
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.5e-31 139.0 109 61.5
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 9.9e-28 127.1 115 55.7
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.9e-27 125.6 92 62.0
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 6.4e-27 124.4 97 59.8
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.9e-26 122.9 106 59.4
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 2.4e-26 122.5 90 62.2
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.2e-26 122.1 90 64.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 3.2e-26 122.1 107 57.9
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.2e-26 122.1 107 57.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 4.1e-26 121.7 85 62.4
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 4.1e-26 121.7 109 57.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 7.1e-26 120.9 103 60.2
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 7.1e-26 120.9 114 59.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.6e-25 119.8 90 60.0
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.6e-25 119.8 110 54.5
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.5e-25 118.6 86 65.1
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 3.5e-25 118.6 89 62.9
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.8e-25 117.5 113 57.5
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 7.8e-25 117.5 120 50.8
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.0e-24 117.1 92 57.6
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.3e-24 116.7 82 64.6
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.3e-24 116.7 92 63.0
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.3e-24 115.9 88 64.8
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.0e-24 115.5 93 57.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.0e-24 115.5 93 57.0
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.0e-24 115.5 88 64.8
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 3.9e-24 115.2 86 60.5
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.9e-24 115.2 120 49.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 6.6e-24 114.4 122 50.0
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.1e-23 113.6 93 54.8
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.5e-23 113.2 115 52.2
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.5e-23 113.2 131 48.1
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.9e-23 112.8 134 49.3
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.9e-23 112.8 127 44.9
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.9e-23 112.8 89 57.3
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.5e-23 112.5 114 50.9
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 3.3e-23 112.1 86 60.5
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 3.3e-23 112.1 106 52.8
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 4.3e-23 111.7 122 48.4
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 5.6e-23 111.3 104 55.8
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 7.3e-23 110.9 117 48.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 9.5e-23 110.5 78 60.3
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 9.5e-23 110.5 106 54.7
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 9.5e-23 110.5 132 43.9
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.2e-22 110.2 133 45.9
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.2e-22 110.2 90 55.6
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.6e-22 109.8 90 57.8
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.6e-22 109.8 95 56.8
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.6e-22 109.8 86 58.1
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 2.1e-22 109.4 134 47.0
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.1e-22 109.4 104 51.9
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.1e-22 109.4 87 58.6
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 3.6e-22 108.6 125 45.6
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 4.7e-22 108.2 78 60.3
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 4.7e-22 108.2 99 53.5
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 4.7e-22 108.2 132 43.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 4.7e-22 108.2 91 54.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 6.2e-22 107.8 85 58.8
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 6.2e-22 107.8 82 65.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 6.2e-22 107.8 99 54.5
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.1e-21 107.1 105 51.4
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.4e-21 106.7 86 55.8
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.4e-21 106.7 92 56.5
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.8e-21 106.3 130 46.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.4e-21 105.9 130 46.2
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.4e-21 105.9 89 59.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 4.0e-21 105.1 133 45.9
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 8.9e-21 104.0 87 55.2
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.5e-20 103.2 92 53.3
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 1.5e-20 103.2 104 50.0
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.5e-20 103.2 86 53.5
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.0e-20 102.8 98 53.1
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.6e-20 102.4 127 45.7
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 4.4e-20 101.7 129 45.7
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 9.9e-20 100.5 108 50.9
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 2.2e-19 99.4 104 49.0
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 2.2e-19 99.4 93 52.7
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 2.2e-19 99.4 113 45.1
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.9e-19 99.0 104 51.0
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 6.4e-19 97.8 104 48.1
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 8.4e-19 97.4 126 44.4
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.1e-18 97.1 82 57.3
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 3.2e-18 95.5 91 50.5
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.2e-18 95.5 82 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 5.4e-18 94.7 130 43.1
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 9.2e-18 94.0 88 48.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 2.1e-17 92.8 125 40.8
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.7e-17 92.4 106 45.3
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 2.7e-17 92.4 96 51.0
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 2.7e-17 92.4 96 50.0
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 4.6e-17 91.7 65 63.1
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 6.0e-17 91.3 85 51.8
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 7.8e-17 90.9 115 43.5
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.7e-16 89.7 98 50.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.5e-15 86.7 86 48.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 3.3e-15 85.5 100 42.0
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 3.3e-15 85.5 86 45.3
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 3.6e-14 82.0 88 46.6
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 8.1e-14 80.9 104 41.3
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 3.1e-13 79.0 104 41.3
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.2e-12 77.0 56 53.6
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.0e-12 76.3 104 40.4
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 2.0e-12 76.3 121 38.0
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 5.8e-12 74.7 64 51.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 1.4e-10 70.1 86 39.5
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 4.2e-10 68.6 124 37.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 7.8e-09 64.3 104 34.6
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.7e-08 63.2 113 32.7
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.7e-08 63.2 113 32.7


User provided reference genes

Program Settings