Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 8.3e-160 567.4 376 100.0
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 2.0e-57 227.3 163 66.9
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 1.7e-56 224.2 167 65.9
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 2.9e-56 223.4 167 65.9
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 8.5e-56 221.9 167 65.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.5e-56 221.9 163 65.6
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 1.5e-55 221.1 163 65.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 1.9e-55 220.7 167 65.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 4.2e-55 219.5 163 63.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 7.2e-55 218.8 163 63.2
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 9.4e-55 218.4 167 64.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.2e-54 218.0 167 65.9
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 1.2e-54 218.0 163 63.8
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 3.6e-54 216.5 163 65.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 3.6e-54 216.5 167 63.5
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.7e-54 216.1 163 62.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 6.1e-54 215.7 167 66.5
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 6.1e-54 215.7 163 66.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 1.0e-53 214.9 163 63.8
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 1.4e-53 214.5 167 63.5
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.3e-53 213.8 167 64.1
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 2.3e-53 213.8 167 64.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 3.0e-53 213.4 167 63.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 3.0e-53 213.4 167 62.9
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 8.8e-53 211.8 163 62.6
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.8e-53 211.8 163 62.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 1.5e-52 211.1 165 63.6
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 2.0e-52 210.7 163 63.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.0e-52 210.7 163 62.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 2.6e-52 210.3 167 62.3
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 3.3e-52 209.9 167 61.7
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 3.3e-52 209.9 167 62.9
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.3e-52 209.9 164 62.8
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 3.3e-52 209.9 163 63.2
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 4.4e-52 209.5 167 61.7
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 5.7e-52 209.1 163 62.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 7.5e-52 208.8 153 66.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.3e-51 208.0 169 61.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 2.2e-51 207.2 168 59.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 2.8e-51 206.8 167 61.7
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 2.8e-51 206.8 163 62.6
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 4.8e-51 206.1 162 62.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 4.8e-51 206.1 167 61.7
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 8.2e-51 205.3 163 63.8
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.2e-51 205.3 169 60.9
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 8.2e-51 205.3 167 62.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 1.1e-50 204.9 163 63.2
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 1.4e-50 204.5 163 60.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.4e-50 204.5 167 59.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 2.4e-50 203.8 163 62.0
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 3.1e-50 203.4 163 62.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 5.3e-50 202.6 163 62.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 7.0e-50 202.2 163 63.2
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 1.2e-49 201.4 167 62.9
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 1.2e-49 201.4 163 60.7
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 2.0e-49 200.7 163 60.1
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 2.7e-49 200.3 163 61.3
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 7.7e-49 198.7 178 59.0
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 1.0e-48 198.4 163 58.9
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 1.0e-48 198.4 163 60.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 1.0e-48 198.4 163 59.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 1.0e-48 198.4 163 59.5
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 1.3e-48 198.0 165 60.0
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.2e-48 197.2 163 60.1
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.2e-48 197.2 163 60.1
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 2.2e-48 197.2 162 59.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 2.9e-48 196.8 167 55.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 8.5e-48 195.3 165 58.8
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.1e-47 194.9 163 62.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.1e-47 194.9 163 62.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.9e-47 194.1 167 58.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 1.9e-47 194.1 164 59.8
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 3.2e-47 193.4 163 58.3
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.2e-47 193.4 176 57.4
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 5.5e-47 192.6 163 58.3
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 2.7e-46 190.3 163 54.6
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.6e-46 189.9 162 59.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 4.7e-46 189.5 163 61.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 2.0e-44 184.1 163 55.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.6e-44 183.7 163 55.2
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 2.6e-44 183.7 162 53.1
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 5.7e-44 182.6 162 54.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 7.5e-44 182.2 165 58.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.5e-44 182.2 146 60.3
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.8e-42 177.6 162 54.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 2.4e-42 177.2 162 54.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 5.4e-42 176.0 162 51.9
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 2.0e-41 174.1 167 54.5
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 3.8e-40 169.9 165 52.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 1.9e-39 167.5 172 50.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 3.2e-39 166.8 166 50.6
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 9.4e-39 165.2 183 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.1e-38 164.1 162 50.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 4.7e-38 162.9 163 52.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 5.2e-37 159.5 216 44.9
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 6.8e-37 159.1 163 50.9
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 1.5e-36 157.9 170 48.8
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 4.1e-34 149.8 171 47.4
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.2e-33 148.3 167 49.1
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 7.7e-33 145.6 154 51.9
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 9.5e-23 112.1 83 65.1
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.5e-20 104.8 112 47.3
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 4.9e-19 99.8 108 50.9
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 1.1e-18 98.6 83 59.0
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.2e-18 95.5 76 64.5
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 3.5e-17 93.6 80 61.2
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.6e-16 89.4 60 68.3
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 8.6e-16 89.0 166 33.1
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.6e-15 86.3 85 55.3
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.2e-14 85.1 78 52.6
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-14 85.1 64 70.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.4e-13 81.6 86 54.7
SHI13577 Sapria himalayana HOM05D001670 ORTHO05D010670 1.2e-12 78.6 53 71.7
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.8e-12 75.5 44 81.8
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.2e-11 74.3 43 83.7
SHI03645 Sapria himalayana HOM05D012376 ORTHO05D006507 1.6e-09 68.2 74 51.4
SHI09082 Sapria himalayana HOM05D000966 ORTHO05D007323 4.6e-09 66.6 44 70.5
SHI09755 Sapria himalayana HOM05D044593 ORTHO05D010670 4.6e-09 66.6 45 71.1
SHI20108 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-08 63.5 76 50.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 4.7e-06 56.6 75 45.3


User provided reference genes

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