Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04409 Sapria himalayana HOM05D003986 ORTHO05D004916 2.1e-51 205.3 98 100.0
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 2.2e-08 62.4 89 43.8
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 8.5e-08 60.5 35 82.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 4.2e-07 58.2 57 56.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 4.2e-07 58.2 57 56.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 7.2e-07 57.4 67 46.3
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.6e-06 56.2 65 49.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.6e-06 56.2 35 80.0
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.1e-06 55.8 60 51.7
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 2.1e-06 55.8 40 65.0
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.7e-06 55.5 35 77.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 2.7e-06 55.5 35 77.1
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 2.7e-06 55.5 35 77.1
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 2.7e-06 55.5 35 77.1
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 2.7e-06 55.5 35 77.1
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 2.7e-06 55.5 31 87.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 2.7e-06 55.5 57 54.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 2.7e-06 55.5 57 54.4
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 3.6e-06 55.1 53 54.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 3.6e-06 55.1 48 56.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 3.6e-06 55.1 35 77.1
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 4.7e-06 54.7 35 77.1
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 4.7e-06 54.7 35 77.1
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 4.7e-06 54.7 35 77.1
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 4.7e-06 54.7 35 77.1
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 4.7e-06 54.7 33 78.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 6.1e-06 54.3 30 83.3
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 6.1e-06 54.3 35 77.1
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 6.1e-06 54.3 67 49.3
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 6.1e-06 54.3 67 49.3
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 6.1e-06 54.3 35 77.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 6.1e-06 54.3 35 77.1
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 6.1e-06 54.3 30 83.3
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 6.1e-06 54.3 30 83.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 6.1e-06 54.3 53 58.5
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.1e-06 54.3 35 77.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 6.1e-06 54.3 30 83.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 8.0e-06 53.9 30 83.3


User provided reference genes

Program Settings