Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 5.3e-179 630.9 325 100.0
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.9e-128 463.0 313 75.1
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 2.5e-128 462.6 313 73.8
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 3.7e-124 448.7 354 66.7
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 4.8e-124 448.4 354 66.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.1e-120 437.2 354 65.5
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 5.5e-120 434.9 354 65.8
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 2.1e-119 433.0 340 64.4
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 2.1e-119 433.0 358 64.5
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.8e-118 429.9 354 64.1
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 2.3e-118 429.5 350 65.4
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.2e-118 428.3 353 64.0
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 8.8e-118 427.6 354 65.5
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.2e-117 427.2 354 63.8
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.2e-117 427.2 340 63.8
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.4e-117 425.2 341 63.3
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.4e-117 425.2 341 63.3
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.8e-117 424.1 341 63.3
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.7e-116 423.3 354 63.6
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.2e-116 422.9 354 63.0
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 2.2e-116 422.9 354 63.8
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 2.8e-116 422.5 354 63.6
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.8e-116 422.5 341 64.2
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 4.8e-116 421.8 353 63.5
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 6.3e-116 421.4 336 67.9
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 6.3e-116 421.4 354 63.3
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.1e-115 420.6 354 62.1
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.8e-115 419.9 354 62.7
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.4e-115 419.5 357 63.3
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.0e-115 417.9 349 61.9
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 7.0e-115 417.9 354 62.7
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 9.1e-115 417.5 353 62.9
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 9.1e-115 417.5 354 62.7
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 9.1e-115 417.5 340 62.9
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.6e-114 416.8 354 63.0
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.7e-114 416.0 354 61.0
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 3.5e-114 415.6 355 60.8
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 4.5e-114 415.2 351 62.4
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.7e-113 413.3 364 60.2
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.9e-113 412.5 355 62.5
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 2.9e-113 412.5 354 62.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 5.0e-113 411.8 354 62.1
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 8.5e-113 411.0 354 61.3
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 2.1e-111 406.4 323 65.9
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 2.1e-111 406.4 377 57.8
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 2.7e-111 406.0 354 61.6
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 8.0e-111 404.4 326 66.0
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-110 403.3 354 60.7
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 5.2e-110 401.7 363 59.0
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-109 400.6 375 58.4
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.2e-109 400.6 354 61.0
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 3.4e-109 399.1 370 60.3
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 9.8e-109 397.5 354 61.0
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 1.3e-108 397.1 354 58.8
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 3.7e-108 395.6 331 63.7
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 4.1e-107 392.1 339 62.5
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 3.5e-106 389.0 354 60.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.9e-106 388.3 354 57.9
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.0e-105 387.5 356 58.1
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 2.9e-105 386.0 353 58.9
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 2.9e-105 386.0 418 52.6
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 5.0e-105 385.2 338 62.7
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 8.6e-105 384.4 372 57.8
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 1.1e-104 384.0 359 56.3
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 5.6e-104 381.7 339 60.2
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 9.5e-104 380.9 353 58.6
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 9.5e-104 380.9 353 58.4
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.1e-103 379.8 353 58.4
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 2.1e-103 379.8 353 58.4
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 2.1e-103 379.8 336 61.3
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 4.7e-103 378.6 343 59.5
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 8.0e-103 377.9 355 58.0
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.0e-102 377.5 358 55.9
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.9e-100 369.4 340 57.9
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.1e-99 367.5 286 69.6
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 3.2e-99 365.9 339 57.5
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 4.1e-99 365.5 348 57.8
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 7.0e-99 364.8 348 58.0
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 5.9e-98 361.7 345 57.7
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.0e-97 360.9 407 50.9
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 5.6e-96 355.1 329 59.0
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 5.8e-93 345.1 294 63.9
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.8e-93 345.1 293 64.2
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.5e-93 344.7 293 64.2
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.3e-92 344.0 308 60.7
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.9e-92 342.8 351 54.1
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 8.3e-92 341.3 378 50.0
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 1.3e-89 334.0 352 56.0
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 3.1e-86 322.8 280 60.4
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 9.2e-83 311.2 228 71.1
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 1.3e-81 307.4 340 51.5
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.1e-80 304.3 283 57.6
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.5e-80 303.9 308 55.2
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.6e-79 300.4 182 81.3
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 4.4e-77 292.4 339 49.6
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 8.4e-76 288.1 354 47.2
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 5.4e-75 285.4 356 47.8
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 1.5e-72 277.3 195 73.8
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 8.1e-71 271.6 353 45.9
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-69 267.7 338 48.2
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.6e-69 266.5 357 46.8
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-67 259.2 341 46.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 6.9e-62 241.9 340 43.5
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.4e-59 233.4 335 40.6
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.1e-55 220.3 356 40.4
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 6.2e-55 218.8 303 44.6
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 7.6e-53 211.8 307 43.0
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 7.1e-51 205.3 135 73.3
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.2e-50 204.5 237 53.6
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.2e-50 204.5 150 64.7
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.2e-50 204.5 152 66.4
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 7.9e-50 201.8 151 68.2
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.5e-48 197.6 135 71.9
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-46 189.5 209 51.7
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.5e-45 187.6 190 53.2
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 5.8e-45 185.7 317 38.8
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.2e-44 183.7 154 63.6
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-43 181.4 145 65.5
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.0e-41 174.9 119 75.6
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-40 170.6 184 52.7
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.7e-40 169.1 111 77.5
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 3.1e-38 163.3 114 69.3
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.3e-36 157.9 242 43.4
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.3e-32 143.3 159 48.4
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 2.8e-31 140.2 163 47.9
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 8.2e-31 138.7 89 76.4
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.1e-30 138.3 91 73.6
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 4.1e-30 136.3 87 75.9
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.2e-29 134.8 158 46.8
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.7e-28 131.0 159 44.7
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 9.7e-24 115.2 286 30.8
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 2.6e-21 107.1 84 56.0
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-21 106.3 84 63.1
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-21 106.3 84 63.1
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-21 106.3 84 63.1
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-21 106.3 84 63.1
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 5.9e-21 105.9 70 77.1
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-20 104.8 75 69.3
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.3e-20 104.8 91 59.3
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.7e-20 104.4 64 76.6
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.8e-20 103.2 140 50.0
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.1e-19 101.7 77 64.9
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 3.2e-19 100.1 124 48.4
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 4.2e-19 99.8 224 33.0
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 9.4e-19 98.6 136 47.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.6e-18 97.8 82 63.4
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 3.6e-18 96.7 73 67.1
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 2.0e-16 90.9 126 42.9
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 2.6e-16 90.5 83 55.4
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.1e-14 85.1 54 75.9
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.1e-14 83.6 100 47.0
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-13 81.6 48 87.5
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 2.0e-13 80.9 314 24.2
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 2.9e-12 77.0 61 59.0
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.1e-11 75.1 66 53.0
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.1e-11 75.1 66 53.0
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 9.4e-11 72.0 81 44.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 1.2e-10 71.6 47 76.6
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 4.7e-10 69.7 47 74.5
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.0e-09 68.6 61 50.8
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 8.8e-09 65.5 40 80.0
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 2.4e-06 57.4 51 60.8
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 9.1e-06 55.5 42 66.7


User provided reference genes

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