Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04081 Sapria himalayana HOM05D006324 ORTHO05D007463 2.1e-120 435.6 207 100.0
Dinv43416 Davidia involucrata HOM05D006324 ORTHO05D007463 1.7e-42 176.8 118 69.5
unitig_8.g3776 Utricularia gibba HOM05D006324 ORTHO05D007463 1.7e-42 176.8 129 65.9
CAN.G219.51 Capsicum annuum HOM05D006324 ORTHO05D007463 2.9e-42 176.0 127 66.1
Ciclev10032828m.g Citrus clementina HOM05D006324 ORTHO05D007463 2.9e-42 176.0 118 71.2
MSTRG.17017 Avicennia marina HOM05D006324 ORTHO05D007463 5.0e-42 175.3 118 69.5
Prupe.2G017700 Prunus persica HOM05D006324 ORTHO05D007463 5.0e-42 175.3 117 71.8
Prupe.2G019000 Prunus persica HOM05D006324 ORTHO05D007463 5.0e-42 175.3 117 71.8
Hund18591 Selenicereus undatus HOM05D006324 ORTHO05D007463 5.0e-42 175.3 121 68.6
CANSAT80G0022 Cannabis sativa HOM05D006324 ORTHO05D007463 8.6e-42 174.5 132 63.6
CSS0038258 Camellia sinensis var. sinensis HOM05D006324 ORTHO05D007463 1.1e-41 174.1 118 70.3
Dinv09327 Davidia involucrata HOM05D006324 ORTHO05D007463 2.5e-41 172.9 118 68.6
QL04p008819 Quercus lobata HOM05D006324 ORTHO05D007463 2.5e-41 172.9 118 68.6
GSVIVG01032154001 Vitis vinifera HOM05D006324 ORTHO05D007463 2.5e-41 172.9 118 70.3
Eucgr.G03365 Eucalyptus grandis HOM05D006324 ORTHO05D007463 3.3e-41 172.6 118 68.6
PGR031G0767 Punica granatum HOM05D006324 ORTHO05D007463 3.3e-41 172.6 140 60.7
Atru.chr11.2585 Acer truncatum HOM05D006324 ORTHO05D007463 5.6e-41 171.8 113 71.7
Duzib133G0472 Durio zibethinus HOM05D006324 ORTHO05D007463 5.6e-41 171.8 116 69.8
RcHm_v2.0_Chr1g0317051 Rosa chinensis HOM05D006324 ORTHO05D007463 5.6e-41 171.8 119 68.1
Sc16g0002910 Simmondsia chinensis HOM05D006324 ORTHO05D007463 5.6e-41 171.8 120 67.5
Migut.N01783 Erythranthe guttata HOM05D006324 ORTHO05D007463 7.3e-41 171.4 128 64.1
Oeu049007.1 Olea europaea HOM05D006324 ORTHO05D007463 7.3e-41 171.4 116 69.8
TWI53G0677 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 7.3e-41 171.4 118 67.8
Peaxi162Scf00019g00017 Petunia axillaris HOM05D006324 ORTHO05D007463 1.2e-40 170.6 127 64.6
SalBow6G4289 Salvia bowleyana HOM05D006324 ORTHO05D007463 1.2e-40 170.6 114 69.3
TWI74G1214 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 1.2e-40 170.6 118 66.9
MSTRG.20569 Avicennia marina HOM05D006324 ORTHO05D007463 2.8e-40 169.5 120 65.0
Ca_14667_v3 Cicer arietinum L. HOM05D006324 ORTHO05D007463 2.8e-40 169.5 113 69.9
MD02G1307800 Malus domestica HOM05D006324 ORTHO05D007463 3.6e-40 169.1 117 69.2
Thecc.09G178400 Theobroma cacao HOM05D006324 ORTHO05D007463 3.6e-40 169.1 117 69.2
CsaV3_7G030870 Cucumis sativus L. HOM05D006324 ORTHO05D007463 4.7e-40 168.7 150 56.7
FAN03G2871 Fragaria x ananassa HOM05D006324 ORTHO05D007463 4.7e-40 168.7 122 65.6
Glyma.12G009100 Glycine max HOM05D006324 ORTHO05D007463 4.7e-40 168.7 181 50.3
Potri.001G263800 Populus trichocarpa HOM05D006324 ORTHO05D007463 4.7e-40 168.7 115 70.4
Gohir.A12G094300 Gossypium hirsutum HOM05D006324 ORTHO05D007463 6.1e-40 168.3 118 66.9
MBI04_g17676_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 6.1e-40 168.3 138 58.0
Ah.10g038740 Amaranthus hybridus HOM05D006324 ORTHO05D007463 8.0e-40 167.9 123 65.0
FvH4_7g01340 Fragaria vesca HOM05D006324 ORTHO05D007463 8.0e-40 167.9 122 64.8
Gohir.D12G097000 Gossypium hirsutum HOM05D006324 ORTHO05D007463 8.0e-40 167.9 116 68.1
Gorai.008G105500 Gossypium raimondii HOM05D006324 ORTHO05D007463 8.0e-40 167.9 116 68.1
Hma1.2p1_1328F.1_g275960 Hydrangea macrophylla HOM05D006324 ORTHO05D007463 8.0e-40 167.9 117 69.2
Lj3g0003899 Lotus japonicus HOM05D006324 ORTHO05D007463 8.0e-40 167.9 118 66.1
Migut.O00526 Erythranthe guttata HOM05D006324 ORTHO05D007463 1.0e-39 167.5 117 68.4
VMungo0464G1625 Vigna mungo HOM05D006324 ORTHO05D007463 1.0e-39 167.5 118 66.9
MELO3C023574.2 Cucumis melo HOM05D000009 ORTHO05D007463 1.4e-39 167.2 119 65.5
Sed0027296 Sechium edule HOM05D006324 ORTHO05D007463 1.4e-39 167.2 126 64.3
Glyma.09G227600 Glycine max HOM05D006324 ORTHO05D007463 2.3e-39 166.4 120 65.0
Phvul.004G011500 Phaseolus vulgaris HOM05D006324 ORTHO05D007463 2.3e-39 166.4 114 67.5
SEGI_35641 Sequoiadendron giganteum HOM05D006324 ORTHO05D007463 2.3e-39 166.4 117 67.5
Medtr0085s0010 Medicago truncatula HOM05D006324 ORTHO05D007463 3.0e-39 166.0 114 67.5
Sabra16G0162000 Salix brachista HOM05D006324 ORTHO05D007463 3.0e-39 166.0 115 68.7
Sopen01g034520 Solanum pennellii HOM05D006324 ORTHO05D007463 4.0e-39 165.6 118 66.1
vmacro13685 Vaccinium macrocarpon HOM05D006324 ORTHO05D007463 4.0e-39 165.6 119 66.4
Lalb_Chr01g0000431 Lupinus albus HOM05D006324 ORTHO05D007463 6.8e-39 164.9 114 65.8
Zm00001eb095000 Zea mays HOM05D006324 ORTHO05D007463 6.8e-39 164.9 115 68.7
Rhsim07G0057200 Rhododendron simsii HOM05D006324 ORTHO05D007463 1.2e-38 164.1 117 67.5
Lsat_1_v5_gn_1_105261 Lactuca sativa HOM05D006324 ORTHO05D007463 1.5e-38 163.7 122 65.6
Solyc01g087550.3 Solanum lycopersicum HOM05D006324 ORTHO05D007463 1.5e-38 163.7 118 65.3
HanXRQChr12g0357631 Helianthus annuus HOM05D006324 ORTHO05D007463 2.6e-38 162.9 120 64.2
Aqoxy5G04067 Aquilegia oxysepala HOM05D006324 ORTHO05D007463 3.4e-38 162.5 114 64.9
Lj9C636G13 Lonicera japonica HOM05D006324 ORTHO05D007463 7.5e-38 161.4 139 57.6
Lj9C638G12 Lonicera japonica HOM05D006324 ORTHO05D007463 7.5e-38 161.4 139 57.6
Cc02_g28340 Coffea canephora HOM05D006324 ORTHO05D007463 1.3e-37 160.6 116 64.7
MD07G1017800 Malus domestica HOM05D006324 ORTHO05D007463 1.7e-37 160.2 122 63.9
CiPaw.13G007100 Carya illinoinensis HOM05D006324 ORTHO05D007463 2.2e-37 159.8 117 64.1
Sp6g33690 Schrenkiella parvula HOM05D006324 ORTHO05D007463 2.9e-37 159.5 123 61.8
ECA248G0404 Erigeron canadensis HOM05D000636 ORTHO05D002338 6.4e-37 158.3 116 64.7
Os07g0232200 Oryza sativa ssp. japonica HOM05D006324 ORTHO05D007463 1.4e-36 157.1 115 66.1
BcaB08g37192 Brassica carinata HOM05D000446 ORTHO05D000321 1.9e-36 156.8 124 58.9
BolC9t59542H Brassica oleracea HOM05D000446 ORTHO05D000321 1.9e-36 156.8 124 58.9
HPP92_005467 Vanilla planifolia HOM05D006324 ORTHO05D007463 1.9e-36 156.8 118 63.6
A10p27710 Brassica napus HOM05D000446 ORTHO05D000321 3.2e-36 156.0 124 58.9
BraA10t44823Z Brassica rapa HOM05D000446 ORTHO05D000321 4.1e-36 155.6 124 58.9
AL6G20110 Arabidopsis lyrata HOM05D006324 ORTHO05D007463 7.0e-36 154.8 146 52.7
AT5G09680 Arabidopsis thaliana HOM05D006324 ORTHO05D007463 7.0e-36 154.8 123 59.3
Thhalv10014674m.g Eutrema salsugineum HOM05D006324 ORTHO05D007463 9.2e-36 154.5 123 59.3
FAN01G1980 Fragaria x ananassa HOM05D006324 ORTHO05D007463 9.2e-36 154.5 142 54.9
BcaB05g21537 Brassica carinata HOM05D006324 ORTHO05D007463 2.0e-35 153.3 124 60.5
C09p67800 Brassica napus HOM05D000446 ORTHO05D000321 2.0e-35 153.3 118 61.0
MBI02_g23139_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 2.7e-35 152.9 116 61.2
BcaC03g13270 Brassica carinata HOM05D006324 ORTHO05D007463 4.6e-35 152.1 124 59.7
C02p04000 Brassica napus HOM05D006324 ORTHO05D007463 4.6e-35 152.1 124 59.7
Carub.0008s1534 Capsella rubella HOM05D006324 ORTHO05D007463 7.8e-35 151.4 123 57.7
BcaB08g37153 Brassica carinata HOM05D006324 ORTHO05D007463 1.0e-34 151.0 118 60.2
Carub.0004s0655 Capsella rubella HOM05D006324 ORTHO05D007463 2.3e-34 149.8 123 57.7
Haze_03172 Corylus avellana HOM05D006324 ORTHO05D007463 3.9e-34 149.1 151 53.0
BraA02t04996Z Brassica rapa HOM05D006324 ORTHO05D007463 5.0e-34 148.7 119 60.5
SMO331G0043 Selaginella moellendorffii HOM05D006324 ORTHO05D007463 1.5e-33 147.1 110 61.8
CARHR203710 Cardamine hirsuta HOM05D006324 ORTHO05D007463 1.9e-33 146.7 113 61.9
Peaxi162Scf00071g01141 Petunia axillaris HOM05D006324 ORTHO05D007463 3.3e-33 146.0 127 58.3
Aa31LG3G17390 Aethionema arabicum HOM05D006324 ORTHO05D007463 3.6e-32 142.5 112 62.5
A02p00110 Brassica napus HOM05D006324 ORTHO05D007463 1.4e-31 140.6 152 48.0
Mapoly0022s0092 Marchantia polymorpha HOM05D006324 ORTHO05D007463 5.2e-31 138.7 119 55.5
FAN06G0074 Fragaria x ananassa HOM05D006324 ORTHO05D007463 4.4e-30 135.6 122 55.7
TAR633G2637 Trochodendron aralioides HOM05D006324 ORTHO05D007463 3.7e-29 132.5 104 61.5
arahy.Tifrunner.gnm1.ann1.N2H6V0 Arachis hypogaea HOM05D006324 ORTHO05D007463 6.4e-29 131.7 119 54.6
arahy.Tifrunner.gnm1.ann1.Q955DD Arachis hypogaea HOM05D006324 ORTHO05D007463 6.4e-29 131.7 119 54.6
HanXRQChr01g0015801 Helianthus annuus HOM05D006324 ORTHO05D007463 1.9e-28 130.2 121 54.5
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 3.2e-28 129.4 100 63.0
Nn7g36262 Nelumbo nucifera HOM05D006324 ORTHO05D007463 9.2e-28 127.9 108 59.3
CDE02G1674 Ceratophyllum demersum HOM05D006324 ORTHO05D007463 2.1e-27 126.7 95 62.1
AUR62023082 Chenopodium quinoa HOM05D006324 ORTHO05D007463 1.7e-26 123.6 98 60.2
AUR62009399 Chenopodium quinoa HOM05D006324 ORTHO05D007463 3.0e-26 122.9 98 60.2
Cre13.g574800 Chlamydomonas reinhardtii HOM05D006324 ORTHO05D007463 2.5e-25 119.8 113 50.4
ATR0618G422 Amborella trichopoda HOM05D006324 ORTHO05D007463 4.3e-25 119.0 90 61.1
AagrBONN_evm.TU.Sc2ySwM_344.4124 Anthoceros agrestis HOM05D006324 ORTHO05D007463 5.6e-25 118.6 97 57.7
Nitab4.5_0000707g0250 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.2e-24 117.5 85 64.7
Nitab4.5_0005981g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.2e-24 117.5 85 64.7
SGA_v2.0_scaffold119G32747 Striga asiatica HOM05D006324 ORTHO05D007463 1.6e-24 117.1 89 64.0
Manes.07G007700 Manihot esculenta HOM05D006324 ORTHO05D007463 4.7e-24 115.5 86 65.1
COL.COLO4_24418 Corchorus olitorius HOM05D006324 ORTHO05D007463 1.1e-23 114.4 90 60.0
Aa31sc1834G10 Aethionema arabicum HOM05D006324 ORTHO05D007463 1.8e-23 113.6 96 58.3
EL10Ac2g04346 Beta vulgaris HOM05D006324 ORTHO05D007463 2.3e-23 113.2 80 67.5
Cpa.g.sc12.280 Carica papaya HOM05D006324 ORTHO05D007463 1.5e-22 110.5 78 65.4
CiPaw.14G001800 Carya illinoinensis HOM05D006324 ORTHO05D007463 3.4e-22 109.4 75 65.3
Pp3c20_23480 Physcomitrium patens HOM05D006324 ORTHO05D007463 3.4e-22 109.4 119 47.9
PGSC0003DMG401006791 Solanum tuberosum HOM05D006324 ORTHO05D007463 3.4e-22 109.4 97 55.7
Lj3g0011240 Lotus japonicus HOM05D006324 ORTHO05D007463 5.8e-22 108.6 76 65.8
ClCG09G003970 Citrullus lanatus HOM05D006324 ORTHO05D007463 8.3e-21 104.8 71 66.2
DCAR_023954 Daucus carota HOM05D006324 ORTHO05D007463 1.1e-20 104.4 79 63.3
MCO04G106 Micromonas commoda HOM05D006324 ORTHO05D007463 2.4e-20 103.2 102 42.2
Nitab4.5_0000087g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 6.2e-16 88.6 70 57.1
CBR_g29320 Chara braunii HOM05D006324 ORTHO05D007463 3.1e-15 86.3 78 48.7
AUR62027968 Chenopodium quinoa HOM05D006324 ORTHO05D007463 1.4e-12 77.4 59 57.6
Cfa026803 Carpinus fangiana HOM05D006324 ORTHO05D007463 2.4e-12 76.6 112 34.8
FAN10G1589 Fragaria x ananassa HOM05D006324 ORTHO05D007463 2.7e-11 73.2 74 51.4
PRCOL_00001468 Prasinoderma coloniale HOM05D006324 ORTHO05D007463 1.7e-10 70.5 92 39.1
AUR62032791 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.9e-10 69.3 48 60.4
ClCG09G003980 Citrullus lanatus HOM05D006324 ORTHO05D007463 8.7e-10 68.2 45 68.9
Pp3c10_9540 Physcomitrium patens HOM05D000951 ORTHO05D003644 1.4e-07 60.8 90 36.7
Pp3c10_9670 Physcomitrium patens HOM05D000951 ORTHO05D003644 1.4e-07 60.8 90 36.7
HPP92_010974 Vanilla planifolia HOM05D000951 ORTHO05D003644 1.8e-07 60.5 77 33.8
Zm00001eb245550 Zea mays HOM05D000951 ORTHO05D003644 6.9e-07 58.5 113 30.1
SMO118G0400 Selaginella moellendorffii HOM05D001840 ORTHO05D002076 1.2e-06 57.8 78 34.6
Aqoxy5G04054 Aquilegia oxysepala HOM05D001840 ORTHO05D002076 1.5e-06 57.4 81 35.8
CsaV3_2G026760 Cucumis sativus L. HOM05D000951 ORTHO05D003644 1.5e-06 57.4 107 29.9
CsaV3_5G023350 Cucumis sativus L. HOM05D000951 ORTHO05D003644 1.5e-06 57.4 107 29.9
PSO384G1171 Papaver somniferum HOM05D001840 ORTHO05D002076 1.5e-06 57.4 82 36.6
SEGI_31187 Sequoiadendron giganteum HOM05D000634 ORTHO05D007463 1.5e-06 57.4 88 37.5
Lj4g0003083 Lotus japonicus HOM05D001840 ORTHO05D002076 2.6e-06 56.6 82 35.4
Lj4g0007629 Lotus japonicus HOM05D001840 ORTHO05D002076 2.6e-06 56.6 82 35.4
Mapoly0050s0117 Marchantia polymorpha HOM05D001840 ORTHO05D014806 2.6e-06 56.6 75 33.3
Hund16825 Selenicereus undatus HOM05D000951 ORTHO05D003644 2.6e-06 56.6 84 31.0
Gohir.A05G041800 Gossypium hirsutum HOM05D001840 ORTHO05D002076 3.4e-06 56.2 79 35.4
Nn7g37320 Nelumbo nucifera HOM05D001840 ORTHO05D002076 3.4e-06 56.2 82 34.1
ATR0584G196 Amborella trichopoda HOM05D001840 ORTHO05D002076 4.4e-06 55.8 82 34.1
CAN.G626.2 Capsicum annuum HOM05D001840 ORTHO05D002076 4.4e-06 55.8 88 31.8
Manes.18G073250 Manihot esculenta HOM05D000951 ORTHO05D003644 4.4e-06 55.8 82 35.4
Zm00001eb248960 Zea mays HOM05D000634 ORTHO05D000517 4.4e-06 55.8 67 38.8
AagrBONN_evm.TU.Sc2ySwM_344.5248 Anthoceros agrestis HOM05D000951 ORTHO05D003644 5.8e-06 55.5 80 32.5
MD01G1073000 Malus domestica HOM05D001840 ORTHO05D002076 5.8e-06 55.5 79 32.9
Manes.01G251400 Manihot esculenta HOM05D001840 ORTHO05D002076 5.8e-06 55.5 75 37.3
Os02g0649800 Oryza sativa ssp. japonica HOM05D000634 ORTHO05D000517 5.8e-06 55.5 67 38.8
Sed0004027 Sechium edule HOM05D000951 ORTHO05D003644 5.8e-06 55.5 60 40.0
Nn1g08621 Nelumbo nucifera HOM05D000951 ORTHO05D003644 7.6e-06 55.1 60 38.3
MSTRG.8624 Avicennia marina HOM05D000634 ORTHO05D000517 9.9e-06 54.7 83 31.3
Gorai.009G044600 Gossypium raimondii HOM05D001840 ORTHO05D002076 9.9e-06 54.7 79 34.2
MCO01G538 Micromonas commoda HOM05D001840 ORTHO05D014806 9.9e-06 54.7 59 39.0
Psat5g134440 Pisum sativum HOM05D000951 ORTHO05D003644 9.9e-06 54.7 70 40.0
SGA_v2.0_scaffold52G19019 Striga asiatica HOM05D000951 ORTHO05D003644 9.9e-06 54.7 73 38.4


User provided reference genes

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