Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 9.3e-83 310.1 148 100.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 5.7e-40 167.9 104 73.1
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 7.5e-40 167.5 142 59.2
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.5e-40 167.5 104 74.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.3e-39 166.8 103 74.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.2e-39 166.0 104 74.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.7e-39 165.2 104 72.1
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.7e-39 165.2 104 72.1
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.9e-39 164.9 104 73.1
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 4.9e-39 164.9 105 71.4
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 6.3e-39 164.5 104 71.2
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 8.3e-39 164.1 104 70.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 8.3e-39 164.1 104 72.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-38 163.7 104 73.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.4e-38 163.3 104 72.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.8e-38 162.9 123 63.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.8e-38 162.9 104 73.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.8e-38 162.9 106 70.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.4e-38 162.5 148 55.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 3.1e-38 162.2 104 71.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 4.1e-38 161.8 104 71.2
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 7.0e-38 161.0 102 72.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.0e-38 161.0 104 71.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.2e-37 160.2 104 72.1
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.2e-37 160.2 104 69.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.2e-37 160.2 104 70.2
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.6e-37 159.8 104 70.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.0e-37 159.5 104 70.2
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.0e-37 159.5 104 70.2
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.0e-37 159.5 104 70.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.7e-37 159.1 138 59.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.5e-37 158.7 104 68.3
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.5e-37 158.7 104 71.2
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.5e-37 158.3 133 60.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 5.9e-37 157.9 104 70.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.9e-37 157.9 104 70.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 5.9e-37 157.9 104 69.2
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.9e-37 157.9 104 70.2
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 7.8e-37 157.5 104 69.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 7.8e-37 157.5 104 69.2
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 7.8e-37 157.5 104 70.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 7.8e-37 157.5 104 69.2
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.0e-36 157.1 104 70.2
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.0e-36 157.1 104 69.2
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.3e-36 156.8 104 70.2
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.3e-36 156.8 104 69.2
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-36 156.8 104 68.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.3e-36 156.8 104 68.3
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.7e-36 156.4 104 69.2
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.7e-36 156.4 160 51.9
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.7e-36 156.4 104 71.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.3e-36 156.0 102 71.6
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.3e-36 156.0 138 58.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.3e-36 156.0 136 58.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.9e-36 155.6 104 70.2
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.9e-36 155.6 160 51.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.9e-36 155.6 104 68.3
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.9e-36 155.6 104 68.3
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.9e-36 155.6 104 67.3
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.8e-36 155.2 104 69.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.8e-36 155.2 108 63.9
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 3.8e-36 155.2 99 72.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 69.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 69.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 69.2
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 69.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 69.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.0e-36 154.8 104 67.3
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 5.0e-36 154.8 137 56.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.0e-36 154.8 102 70.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 6.6e-36 154.5 104 68.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.6e-36 154.5 104 67.3
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 6.6e-36 154.5 104 69.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.6e-36 154.1 104 67.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 8.6e-36 154.1 104 67.3
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 8.6e-36 154.1 104 67.3
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.5e-35 153.3 137 56.9
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.5e-35 153.3 104 66.3
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.5e-35 152.5 104 67.3
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.5e-35 152.5 104 67.3
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.5e-35 152.5 104 67.3
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.3e-35 152.1 138 55.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.6e-35 151.4 121 60.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-34 150.2 104 70.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.6e-34 149.8 103 67.0
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 3.6e-34 148.7 104 65.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-33 147.1 104 64.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-33 147.1 104 64.4
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.4e-33 146.7 104 66.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.4e-30 136.7 110 58.2
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.2e-30 135.6 104 59.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 9.2e-30 134.0 104 59.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.7e-29 132.5 81 74.1
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 7.8e-29 131.0 81 71.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.0e-28 129.0 104 60.6
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.8e-25 117.9 66 78.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.7e-23 112.1 66 75.8
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-20 102.4 65 69.2
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-19 99.0 73 65.8
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 9.5e-19 97.4 96 50.0
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 6.8e-17 91.3 94 44.7
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-16 90.5 50 80.0
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-15 86.3 50 76.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-14 83.2 57 64.9
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-14 81.6 55 67.3
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.0e-13 78.2 57 63.2
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.0e-13 78.2 57 63.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-08 63.5 34 79.4
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.0e-08 63.2 34 79.4
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.9e-06 56.6 34 67.6
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.2e-06 55.8 39 69.2
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-06 55.1 34 73.5


User provided reference genes

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