Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.9e-293 1010.4 502 100.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.6e-129 467.2 439 58.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.3e-128 464.2 441 57.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.8e-128 462.6 438 57.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 6.5e-128 461.8 436 58.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 7.2e-127 458.4 437 56.8
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.7e-126 456.4 442 58.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 8.0e-126 454.9 439 56.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.0e-125 454.5 437 57.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.0e-125 454.5 439 57.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 5.2e-125 452.2 449 55.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.0e-124 450.3 430 57.4
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.6e-124 449.9 425 58.4
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 3.3e-124 449.5 429 56.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 5.7e-124 448.7 438 57.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 7.5e-124 448.4 428 55.8
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 9.7e-124 448.0 444 55.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.8e-123 445.7 430 56.7
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 4.8e-123 445.7 432 55.8
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.8e-123 445.7 437 57.4
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.8e-123 445.7 437 57.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 4.8e-123 445.7 437 57.2
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 6.3e-123 445.3 430 56.7
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 6.3e-123 445.3 430 56.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.2e-123 444.9 440 56.4
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.1e-122 444.5 433 56.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.1e-122 444.5 425 54.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.1e-122 443.0 439 56.3
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.1e-122 442.6 437 55.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.1e-122 442.6 437 56.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 7.0e-122 441.8 440 55.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 7.0e-122 441.8 440 56.1
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.2e-121 441.0 437 56.1
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.6e-121 440.7 433 55.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.6e-121 440.7 440 55.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.0e-121 440.3 440 55.9
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.5e-121 439.1 424 56.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.5e-121 439.1 428 55.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.9e-121 438.7 439 56.3
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 5.9e-121 438.7 436 55.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 7.7e-121 438.3 439 55.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 7.7e-121 438.3 433 56.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.0e-120 438.0 430 54.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.9e-120 436.4 433 55.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.8e-120 436.0 439 55.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.5e-119 434.1 429 54.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.5e-119 434.1 436 53.9
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-119 434.1 443 55.5
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.9e-119 433.7 440 55.2
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.5e-119 433.3 426 54.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.5e-119 433.3 437 54.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.2e-119 432.6 445 53.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.2e-119 432.6 447 53.7
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 9.4e-119 431.4 436 54.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.2e-118 431.0 437 54.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.6e-118 430.6 442 55.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.7e-118 429.9 438 56.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.6e-118 429.5 447 52.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 8.0e-118 428.3 440 54.8
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 8.0e-118 428.3 441 53.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.0e-118 428.3 436 55.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.4e-117 427.6 442 54.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.3e-117 426.8 435 52.6
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 4.0e-117 426.0 434 53.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 8.8e-117 424.9 437 54.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.5e-116 424.1 430 54.4
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.0e-116 423.7 438 54.3
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.0e-116 423.7 437 54.2
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.6e-116 423.3 430 52.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.6e-116 423.3 439 54.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.4e-116 422.9 442 53.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 4.4e-116 422.5 441 52.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.5e-116 421.8 439 53.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.7e-115 419.5 439 52.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.4e-114 417.5 437 53.1
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 7.0e-114 415.2 437 53.1
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 9.1e-114 414.8 437 52.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 9.1e-114 414.8 437 53.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.5e-113 412.9 441 52.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.5e-113 412.9 437 52.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.5e-113 412.5 421 53.2
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.0e-112 411.4 438 53.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.3e-112 411.0 429 51.7
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.1e-111 407.9 438 52.3
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.5e-111 407.5 435 52.0
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.6e-110 404.1 415 53.5
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 4.7e-110 402.5 434 53.5
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.1e-106 391.3 563 44.2
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.8e-106 390.6 434 50.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-106 390.6 321 63.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.1e-106 389.4 321 63.2
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-102 377.9 348 57.5
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.1e-101 373.2 422 52.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.7e-99 366.3 436 47.9
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 7.8e-97 358.6 438 48.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 8.6e-96 355.1 423 48.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 8.0e-94 348.6 444 47.5
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 6.8e-93 345.5 390 50.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.3e-87 326.2 498 40.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-82 310.8 465 43.7
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 6.8e-77 292.4 247 61.5
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 4.3e-71 273.1 221 62.0
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.6e-70 270.0 222 61.7
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.4e-68 263.5 221 62.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 7.8e-65 252.3 209 62.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.7e-59 234.6 443 36.6
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 5.4e-58 229.6 196 60.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 7.9e-49 199.1 170 60.6
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-45 186.0 240 48.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.0e-43 182.2 439 32.6
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-42 177.9 222 48.2
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 4.6e-41 173.3 222 50.5
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 3.9e-40 170.2 163 54.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.1e-31 142.1 187 46.0
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-24 118.6 101 60.4
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.2e-20 105.5 180 41.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 8.5e-19 99.4 101 55.4
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-18 97.8 72 66.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.2e-18 96.3 72 66.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.7e-17 93.6 72 61.1
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 4.7e-17 93.6 135 42.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-16 92.4 71 66.2
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-16 90.5 72 63.9
SHI02882 Sapria himalayana HOM05D000942 ORTHO05D000918 6.7e-16 89.7 51 80.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.8e-14 84.3 260 25.8
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-12 77.4 46 80.4
SHI20242 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-10 70.5 39 79.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 7.2e-10 69.7 41 73.2
SHI18811 Sapria himalayana HOM05D001398 ORTHO05D006507 1.2e-09 68.9 46 67.4
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-09 68.6 88 46.6
SHI03833 Sapria himalayana HOM05D000002 ORTHO05D000001 3.6e-09 67.4 40 77.5
SHI28122 Sapria himalayana HOM05D012376 ORTHO05D006507 6.1e-09 66.6 40 72.5
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-08 64.7 59 57.6
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.3e-08 64.7 38 78.9
SHI26606 Sapria himalayana HOM05D002759 ORTHO05D003290 5.2e-08 63.5 41 70.7
SHI04115 Sapria himalayana HOM05D000512 ORTHO05D000861 8.8e-08 62.8 47 61.7
SHI08441 Sapria himalayana HOM05D012376 ORTHO05D003290 8.8e-08 62.8 46 65.2
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.2e-07 62.4 45 64.4
SHI06012 Sapria himalayana HOM05D001959 ORTHO05D001955 2.0e-07 61.6 41 68.3
SHI14628 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-07 61.2 38 76.3
SHI50060 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-07 61.2 57 59.6
SHI06474 Sapria himalayana HOM05D001167 ORTHO05D001054 3.4e-07 60.8 48 62.5
SHI14862 Sapria himalayana HOM05D043526 ORTHO05D002760 3.4e-07 60.8 83 43.4
SHI22361 Sapria himalayana HOM05D005583 ORTHO05D006507 3.4e-07 60.8 41 70.7
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 3.4e-07 60.8 43 65.1
SHI06325 Sapria himalayana HOM05D001470 ORTHO05D006430 4.4e-07 60.5 40 75.0
SHI18084 Sapria himalayana HOM05D002902 ORTHO05D008934 4.4e-07 60.5 45 64.4
SHI00122 Sapria himalayana HOM05D007925 ORTHO05D009727 7.5e-07 59.7 54 57.4
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 9.7e-07 59.3 42 64.3
SHI33201 Sapria himalayana HOM05D000175 ORTHO05D004574 9.7e-07 59.3 37 75.7
SHI03814 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-06 58.5 40 67.5
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.7e-06 57.4 100 40.0
SHI21057 Sapria himalayana HOM05D000555 ORTHO05D000646 4.8e-06 57.0 63 57.1
SHI29807 Sapria himalayana HOM05D012376 ORTHO05D000014 4.8e-06 57.0 38 68.4
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.3e-06 56.6 47 57.4


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