Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 7.3e-161 570.5 281 100.0
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.6e-59 233.8 147 74.1
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 8.9e-58 228.0 146 73.3
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 8.9e-58 228.0 146 73.3
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.5e-57 227.3 147 71.4
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 7.5e-57 224.9 147 72.1
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.9e-56 223.0 147 70.7
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.9e-56 223.0 147 70.7
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 3.7e-56 222.6 169 66.3
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 6.4e-56 221.9 146 71.9
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 8.3e-56 221.5 147 68.7
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 4.1e-55 219.2 147 70.7
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.2e-54 217.6 146 70.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.0e-54 216.9 163 65.0
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 3.5e-54 216.1 173 63.0
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 4.6e-54 215.7 147 67.3
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 1.3e-53 214.2 142 69.7
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 1.5e-52 210.7 146 67.1
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.5e-52 210.7 146 67.1
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.5e-52 210.7 146 67.1
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.1e-51 206.8 147 63.9
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 5.2e-50 202.2 147 63.3
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 2.0e-49 200.3 160 60.6
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.9e-47 193.7 147 63.3
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 4.1e-47 192.6 147 60.5
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 4.1e-47 192.6 144 65.3
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.7e-46 189.9 145 62.1
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 3.5e-46 189.5 145 62.1
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 2.5e-44 183.3 147 61.2
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.3e-44 183.0 147 61.9
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 9.5e-44 181.4 146 58.2
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 1.4e-42 177.6 165 55.8
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.3e-42 176.8 148 58.8
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 8.9e-42 174.9 140 62.1
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.4e-41 172.9 147 57.1
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 3.7e-40 169.5 121 69.4
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 3.7e-40 169.5 116 68.1
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 6.4e-40 168.7 116 68.1
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.2e-39 166.4 115 67.8
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 5.4e-39 165.6 115 69.6
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.2e-38 164.5 146 56.8
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 2.7e-38 163.3 115 67.0
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.3e-37 161.0 110 70.0
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 2.3e-37 160.2 113 68.1
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.9e-36 157.1 115 64.3
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.9e-36 157.1 111 69.4
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.9e-36 157.1 111 69.4
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.9e-36 157.1 111 69.4
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 4.3e-36 156.0 147 53.1
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 7.3e-36 155.2 115 64.3
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.6e-35 154.1 108 67.6
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.1e-35 153.7 117 61.5
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.1e-35 153.7 111 67.6
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 3.6e-35 152.9 107 67.3
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 4.7e-35 152.5 142 52.8
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 8.1e-35 151.8 116 62.9
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.1e-34 151.4 105 68.6
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.0e-33 147.1 110 65.5
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.7e-32 144.1 112 62.5
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 8.4e-32 141.7 103 66.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.3e-29 133.7 79 78.5
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 3.0e-29 133.3 80 76.2
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 5.1e-29 132.5 77 77.9
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 6.6e-29 132.1 78 78.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.9e-28 130.6 77 77.9
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.5e-28 130.2 147 49.0
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.3e-28 129.8 77 77.9
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 7.3e-28 128.6 97 63.9
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 7.3e-28 128.6 97 63.9
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 3.6e-27 126.3 82 70.7
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.4e-26 124.4 79 73.4
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.4e-26 124.4 79 73.4
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.8e-26 124.0 72 79.2
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.4e-26 123.6 146 45.2
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.4e-26 123.6 146 45.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.4e-26 123.6 146 45.2
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.1e-26 123.2 89 62.9
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 3.1e-26 123.2 77 72.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 5.2e-26 122.5 73 75.3
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 5.2e-26 122.5 77 75.3
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 5.2e-26 122.5 82 65.9
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 6.9e-26 122.1 77 74.0
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.2e-25 121.3 146 44.5
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 2.0e-25 120.6 154 43.5
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 3.4e-25 119.8 72 76.4
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 7.6e-25 118.6 80 66.2
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 1.3e-24 117.9 72 75.0
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.3e-24 117.9 72 75.0
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.3e-24 117.9 72 75.0
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.9e-24 115.9 72 73.6
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 4.9e-24 115.9 72 73.6
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 4.2e-23 112.8 77 66.2
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 5.4e-23 112.5 87 63.2
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.2e-22 111.3 72 69.4
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 2.7e-22 110.2 72 70.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 7.8e-22 108.6 84 61.9
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.9e-21 106.3 78 65.4
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.9e-21 106.3 78 65.4
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.5e-20 104.4 78 65.4
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 4.3e-20 102.8 78 62.8
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 5.6e-20 102.4 74 67.6
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.1e-19 100.5 71 67.6
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.7e-16 90.9 129 38.8
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.2e-16 90.5 70 64.3
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.8e-16 89.7 94 48.9
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 2.4e-15 87.0 56 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 7.1e-15 85.5 86 48.8
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 8.7e-13 78.6 70 51.4
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 5.6e-12 75.9 65 52.3
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.8e-11 73.6 81 44.4
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 6.2e-11 72.4 81 40.7
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 3.1e-10 70.1 42 73.8
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 2.0e-09 67.4 68 41.2
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 2.6e-09 67.0 70 50.0
MD03G1031200 Malus domestica HOM05D065642 ORTHO05D245032 4.9e-08 62.8 56 53.6
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 3.5e-06 56.6 133 27.8
Oeu012215.1 Olea europaea HOM05D001779 ORTHO05D001753 4.6e-06 56.2 128 26.6
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 6.0e-06 55.8 122 24.6
SMO340G0285 Selaginella moellendorffii HOM05D002785 ORTHO05D000003 7.9e-06 55.5 111 34.2


User provided reference genes

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