Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 2.4e-85 318.9 177 100.0
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 9.3e-13 77.8 72 58.3
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 9.3e-13 77.8 74 51.4
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 2.1e-12 76.6 88 51.1
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 6.1e-12 75.1 71 52.1
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 1.0e-11 74.3 71 50.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 1.8e-11 73.6 74 48.6
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 1.8e-11 73.6 71 50.7
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 3.9e-11 72.4 75 46.7
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 6.7e-11 71.6 71 49.3
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 6.7e-11 71.6 71 49.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 6.7e-11 71.6 75 45.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 6.7e-11 71.6 71 50.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 6.7e-11 71.6 80 50.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.5e-10 70.5 75 45.3
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.5e-10 70.5 75 45.3
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.5e-10 69.7 71 46.5
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 2.5e-10 69.7 75 46.7
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 2.5e-10 69.7 71 49.3
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 3.3e-10 69.3 77 53.2
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 3.3e-10 69.3 71 49.3
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 3.3e-10 69.3 69 47.8
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 3.3e-10 69.3 75 44.0
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 4.3e-10 68.9 77 49.4
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 7.4e-10 68.2 75 42.7
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 9.7e-10 67.8 77 48.1
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 1.6e-09 67.0 76 47.4
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 1.6e-09 67.0 75 42.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 1.6e-09 67.0 71 50.7
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 2.2e-09 66.6 71 47.9
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.8e-09 65.5 71 46.5
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 4.8e-09 65.5 75 45.3
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.3e-09 65.1 75 42.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 6.3e-09 65.1 75 45.3
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 6.3e-09 65.1 71 46.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 8.2e-09 64.7 75 45.3
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 8.2e-09 64.7 75 46.7
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 8.2e-09 64.7 71 46.5
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 8.2e-09 64.7 71 46.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 8.2e-09 64.7 75 44.0
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.1e-08 64.3 73 47.9
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 1.1e-08 64.3 71 46.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 1.1e-08 64.3 71 46.5
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 1.1e-08 64.3 73 49.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.4e-08 63.9 77 41.6
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-08 63.9 75 46.7
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 1.4e-08 63.9 78 46.2
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.4e-08 63.9 89 42.7
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 1.8e-08 63.5 71 46.5
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.4e-08 63.2 75 45.3
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 2.4e-08 63.2 75 49.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.1e-08 62.8 71 45.1
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.1e-08 62.4 81 42.0
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 5.3e-08 62.0 72 44.4
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 6.9e-08 61.6 73 43.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 6.9e-08 61.6 75 48.0
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 6.9e-08 61.6 71 45.1
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 9.0e-08 61.2 69 44.9
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 9.0e-08 61.2 70 44.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 1.2e-07 60.8 72 50.0
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 1.5e-07 60.5 70 44.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.5e-07 60.5 70 44.3
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 1.5e-07 60.5 71 40.8
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.0e-07 60.1 77 40.3
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 2.0e-07 60.1 75 42.7
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 2.6e-07 59.7 71 45.1
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 3.4e-07 59.3 71 43.7
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 3.4e-07 59.3 72 43.1
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 3.4e-07 59.3 71 45.1
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 3.4e-07 59.3 75 45.3
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 4.5e-07 58.9 72 44.4
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 5.9e-07 58.5 71 47.9
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 5.9e-07 58.5 77 44.2
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 1.3e-06 57.4 74 47.3
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 1.3e-06 57.4 74 47.3
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.3e-06 57.4 72 44.4
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 2.9e-06 56.2 70 48.6
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 2.9e-06 56.2 73 45.2
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 2.9e-06 56.2 73 45.2
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 3.8e-06 55.8 69 46.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 3.8e-06 55.8 71 43.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 3.8e-06 55.8 71 45.1
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 5.0e-06 55.5 73 45.2
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 5.0e-06 55.5 70 37.1
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 5.0e-06 55.5 79 36.7
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 6.5e-06 55.1 69 43.5
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 6.5e-06 55.1 73 43.8


User provided reference genes

Program Settings