Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 4.5e-164 581.3 304 100.0
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 8.5e-22 108.6 97 55.7
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.5e-21 105.9 86 59.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 5.5e-21 105.9 86 59.3
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 2.7e-20 103.6 86 59.3
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 4.7e-20 102.8 86 60.5
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 4.7e-20 102.8 86 59.3
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 4.7e-20 102.8 86 58.1
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 6.1e-20 102.4 86 59.3
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.0e-19 101.7 86 58.1
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 1.4e-19 101.3 86 58.1
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 1.4e-19 101.3 86 58.1
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.8e-19 100.9 86 58.1
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 1.8e-19 100.9 86 55.8
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 1.8e-19 100.9 86 53.5
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 1.8e-19 100.9 86 57.0
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.3e-19 100.5 86 55.8
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 2.3e-19 100.5 85 58.8
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 3.9e-19 99.8 88 54.5
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 3.9e-19 99.8 85 56.5
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 5.1e-19 99.4 86 55.8
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 5.1e-19 99.4 86 57.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 5.1e-19 99.4 86 57.0
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 5.1e-19 99.4 86 57.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.1e-19 99.4 86 58.1
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 6.7e-19 99.0 86 53.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 6.7e-19 99.0 86 54.7
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 8.8e-19 98.6 86 54.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 2.0e-18 97.4 86 55.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 2.0e-18 97.4 86 60.5
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 2.0e-18 97.4 86 60.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 2.6e-18 97.1 86 55.8
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 2.6e-18 97.1 86 52.3
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.6e-18 97.1 86 52.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 3.3e-18 96.7 86 53.5
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 3.3e-18 96.7 86 53.5
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 4.4e-18 96.3 86 54.7
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 4.4e-18 96.3 86 58.1
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 5.7e-18 95.9 86 53.5
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 7.4e-18 95.5 86 53.5
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.4e-18 95.5 86 53.5
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 9.7e-18 95.1 86 53.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 1.3e-17 94.7 86 50.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.7e-17 94.4 86 53.5
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.7e-17 94.4 86 52.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 1.7e-17 94.4 86 53.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 1.7e-17 94.4 86 54.7
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 2.8e-17 93.6 86 54.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 2.8e-17 93.6 86 54.7
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 3.7e-17 93.2 102 48.0
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 3.7e-17 93.2 86 52.3
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 4.8e-17 92.8 86 53.5
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 6.3e-17 92.4 86 52.3
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 1.1e-16 91.7 86 51.2
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-16 91.3 86 53.5
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.4e-16 91.3 86 52.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 1.8e-16 90.9 86 51.2
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.8e-16 90.9 86 51.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.8e-16 90.9 86 54.7
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 2.4e-16 90.5 87 55.2
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 2.4e-16 90.5 86 51.2
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 2.4e-16 90.5 86 50.0
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 3.1e-16 90.1 88 47.7
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 3.1e-16 90.1 86 52.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 4.1e-16 89.7 86 54.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 5.3e-16 89.4 87 51.7
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 5.3e-16 89.4 86 50.0
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 5.3e-16 89.4 86 53.5
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 9.1e-16 88.6 86 52.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 1.2e-15 88.2 86 53.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 1.2e-15 88.2 86 50.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 1.6e-15 87.8 89 50.6
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 2.6e-15 87.0 86 53.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 2.6e-15 87.0 86 53.5
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 2.6e-15 87.0 86 53.5
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 2.6e-15 87.0 86 53.5
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 2.6e-15 87.0 86 53.5
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.5e-15 86.7 86 54.7
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 3.5e-15 86.7 86 53.5
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 4.5e-15 86.3 86 52.3
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 4.5e-15 86.3 86 53.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 4.5e-15 86.3 86 53.5
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 4.5e-15 86.3 86 53.5
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.0e-14 85.1 86 52.3
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 5.0e-14 82.8 86 52.3
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 6.5e-14 82.4 86 51.2
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 6.5e-14 82.4 86 51.2
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 6.5e-14 82.4 86 50.0
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 8.5e-14 82.0 86 53.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.9e-13 80.9 86 50.0
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 2.5e-13 80.5 86 50.0
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 2.1e-12 77.4 86 48.8
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.6e-12 76.6 86 50.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.4e-11 74.7 67 53.7
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.3e-11 73.9 88 46.6
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 5.7e-10 69.3 58 53.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 1.3e-09 68.2 87 40.2
SHI11937 Sapria himalayana HOM05D000392 ORTHO05D002065 2.4e-08 63.9 53 62.3
SHI26900 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-07 61.6 53 64.2
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.6e-07 61.2 86 40.7
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.6e-07 61.2 86 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.0e-07 60.8 87 42.5
SHI36485 Sapria himalayana HOM05D000616 ORTHO05D000233 2.7e-07 60.5 54 64.8
SHI04699 Sapria himalayana HOM05D202366 ORTHO05D004861 6.5e-06 55.8 55 58.2


User provided reference genes

Program Settings