Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03137 Sapria himalayana HOM05D000002 ORTHO05D006339 4.2e-153 544.7 273 100.0
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.3e-65 252.3 153 74.5
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.3e-65 252.3 153 74.5
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 2.1e-64 250.0 153 74.5
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 2.1e-64 250.0 153 74.5
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 8.0e-64 248.1 153 73.9
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 8.9e-63 244.6 153 72.5
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 8.9e-63 244.6 153 72.5
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 1.2e-62 244.2 153 70.6
Cpa.g.c29901 Carica papaya HOM05D000002 ORTHO05D006339 1.2e-62 244.2 153 70.6
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 1.2e-62 244.2 153 73.2
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 2.0e-62 243.4 153 69.9
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 2.0e-62 243.4 153 73.2
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 2.0e-62 243.4 153 71.2
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 2.6e-62 243.0 153 71.9
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 2.6e-62 243.0 153 72.5
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 4.4e-62 242.3 153 72.5
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 5.8e-62 241.9 153 71.2
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 5.8e-62 241.9 153 70.6
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 5.8e-62 241.9 153 70.6
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 7.5e-62 241.5 153 71.9
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 7.5e-62 241.5 153 71.2
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 1.3e-61 240.7 153 71.2
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 1.7e-61 240.4 153 71.2
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 2.2e-61 240.0 153 71.2
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 2.2e-61 240.0 153 69.3
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 2.2e-61 240.0 153 69.9
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 2.2e-61 240.0 153 70.6
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 2.9e-61 239.6 153 71.9
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 2.9e-61 239.6 153 71.9
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 2.9e-61 239.6 153 71.9
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 2.9e-61 239.6 153 71.9
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 3.7e-61 239.2 153 71.2
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 3.7e-61 239.2 153 70.6
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 3.7e-61 239.2 153 70.6
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 4.9e-61 238.8 153 71.9
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 4.9e-61 238.8 153 69.9
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 6.4e-61 238.4 153 68.6
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 8.3e-61 238.0 153 69.3
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 8.3e-61 238.0 153 69.3
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 1.1e-60 237.7 168 64.3
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 1.1e-60 237.7 153 71.9
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 1.4e-60 237.3 153 71.2
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 1.4e-60 237.3 153 70.6
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-60 236.9 153 70.6
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 1.9e-60 236.9 153 70.6
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 2.4e-60 236.5 153 69.9
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 2.4e-60 236.5 153 69.9
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 2.4e-60 236.5 168 66.7
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 3.2e-60 236.1 153 69.9
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 3.2e-60 236.1 168 66.7
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 4.1e-60 235.7 153 68.0
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 4.1e-60 235.7 153 70.6
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 4.1e-60 235.7 153 68.0
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 4.1e-60 235.7 153 71.9
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 7.1e-60 235.0 153 68.6
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 9.2e-60 234.6 153 68.0
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 9.2e-60 234.6 153 68.6
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 1.2e-59 234.2 153 69.9
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 1.2e-59 234.2 153 70.6
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 1.6e-59 233.8 153 69.3
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 1.6e-59 233.8 153 67.3
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 2.1e-59 233.4 153 69.9
Lj6A285T32 Lonicera japonica HOM05D000002 ORTHO05D006339 2.1e-59 233.4 153 69.9
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 2.1e-59 233.4 168 65.5
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 4.6e-59 232.3 153 68.6
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 4.6e-59 232.3 153 68.0
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 4.6e-59 232.3 153 68.0
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 6.0e-59 231.9 153 66.7
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 1.0e-58 231.1 153 69.9
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 1.0e-58 231.1 153 69.9
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 1.0e-58 231.1 153 67.3
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 1.0e-58 231.1 153 67.3
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 1.7e-58 230.3 153 68.6
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.7e-58 230.3 152 69.1
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 2.3e-58 229.9 168 63.1
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 3.0e-58 229.6 153 66.0
Potri.018G148066 Populus trichocarpa HOM05D000002 ORTHO05D006339 3.9e-58 229.2 153 69.3
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 5.1e-58 228.8 153 69.3
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 8.6e-58 228.0 152 69.1
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 1.1e-57 227.6 153 67.3
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 1.5e-57 227.3 153 69.3
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 1.5e-57 227.3 153 69.3
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 1.9e-57 226.9 153 66.7
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 2.5e-57 226.5 153 67.3
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 5.6e-57 225.3 153 66.0
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 9.5e-57 224.6 153 66.0
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 9.5e-57 224.6 153 65.4
MBI15_g00655_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 3.6e-56 222.6 180 57.8
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 8.1e-56 221.5 155 65.8
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 8.1e-56 221.5 170 62.9
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 1.1e-55 221.1 153 63.4
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.8e-55 220.3 179 58.1
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 2.3e-55 219.9 154 64.9
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 6.8e-55 218.4 154 64.9
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 1.3e-53 214.2 153 63.4
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 6.4e-53 211.8 153 63.4
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 8.3e-53 211.5 156 62.2
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.9e-52 210.3 154 63.6
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 1.2e-48 197.6 157 59.9
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 4.4e-46 189.1 168 57.1
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 1.7e-45 187.2 153 58.2
Pp3c7_4500 Physcomitrium patens HOM05D000002 ORTHO05D006339 1.1e-44 184.5 155 58.7
Mapoly0004s0293 Marchantia polymorpha HOM05D000002 ORTHO05D006339 1.7e-42 177.2 172 50.0
TAR369G0907 Trochodendron aralioides HOM05D000002 ORTHO05D006339 2.5e-41 173.3 111 68.5
Ah.07g204660 Amaranthus hybridus HOM05D000002 ORTHO05D006339 2.0e-38 163.7 111 65.8
SMO361G0562 Selaginella moellendorffii HOM05D000002 ORTHO05D006339 6.4e-37 158.7 155 50.3
AagrBONN_evm.TU.Sc2ySwM_340.348 Anthoceros agrestis HOM05D000002 ORTHO05D006339 1.4e-36 157.5 155 47.7
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 1.9e-36 157.1 101 65.3
arahy.Tifrunner.gnm1.ann1.TJ5BAV Arachis hypogaea HOM05D000002 ORTHO05D006339 5.1e-34 149.1 171 48.5
ATR0626G089 Amborella trichopoda HOM05D000002 ORTHO05D006339 6.6e-34 148.7 101 62.4
Cre10.g466250 Chlamydomonas reinhardtii HOM05D000002 ORTHO05D006339 4.5e-30 136.0 152 48.0
MCO04G295 Micromonas commoda HOM05D000002 ORTHO05D006339 4.2e-28 129.4 161 43.5
unitig_747.g21292 Utricularia gibba HOM05D000002 ORTHO05D006339 4.2e-28 129.4 94 64.9
CBR_g5707 Chara braunii HOM05D000002 ORTHO05D006339 6.0e-27 125.6 153 40.5
Hma1.2p1_0269F.1_g107860 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 6.9e-23 112.1 81 59.3
RcHm_v2.0_Chr2g0145351 Rosa chinensis HOM05D000002 ORTHO05D006339 1.9e-20 104.0 80 53.8
TPR.G23483 Trifolium pratense HOM05D000002 ORTHO05D006339 7.9e-19 98.6 76 56.6
arahy.Tifrunner.gnm1.ann1.G0QTUI Arachis hypogaea HOM05D000002 ORTHO05D006339 6.3e-08 62.4 45 53.3
arahy.Tifrunner.gnm1.ann1.01LB4B Arachis hypogaea HOM05D000002 ORTHO05D006339 1.1e-07 61.6 45 53.3
arahy.Tifrunner.gnm1.ann1.A2CGEK Arachis hypogaea HOM05D000002 ORTHO05D006339 1.1e-07 61.6 45 53.3
arahy.Tifrunner.gnm1.ann1.FU8P75 Arachis hypogaea HOM05D000002 ORTHO05D006339 1.1e-07 61.6 45 53.3
arahy.Tifrunner.gnm1.ann1.0U8Z8Z Arachis hypogaea HOM05D000002 ORTHO05D023301 2.4e-07 60.5 63 42.9
arahy.Tifrunner.gnm1.ann1.YYM1IM Arachis hypogaea HOM05D000002 ORTHO05D006339 1.2e-06 58.2 45 51.1
RcHm_v2.0_Chr4g0397371 Rosa chinensis HOM05D000002 ORTHO05D006339 1.5e-06 57.8 93 39.8


User provided reference genes

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