Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.3e-125 452.2 223 100.0
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 4.0e-45 185.7 178 60.7
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 8.9e-45 184.5 183 59.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.9e-45 184.5 183 59.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-44 183.7 208 54.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.6e-44 183.0 177 59.9
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 3.4e-44 182.6 177 59.9
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.4e-44 182.6 178 59.6
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 9.9e-44 181.0 178 59.0
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.7e-43 180.3 178 58.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 58.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 58.4
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 58.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 59.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 59.0
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 59.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.2e-43 179.9 178 58.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.9e-43 179.5 183 56.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.9e-43 179.5 178 58.4
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.9e-43 179.5 178 58.4
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.8e-43 179.1 178 57.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.9e-43 178.7 178 56.2
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-42 177.6 178 57.9
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-42 177.6 178 57.9
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-42 177.2 183 56.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.9e-42 176.8 178 57.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-42 176.4 178 57.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.2e-42 176.0 178 57.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.2e-42 176.0 178 57.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.2e-42 176.0 178 57.9
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.1e-42 175.6 178 57.3
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 4.1e-42 175.6 178 56.7
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 4.1e-42 175.6 177 57.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.4e-42 175.3 178 56.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 5.4e-42 175.3 178 56.7
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 5.4e-42 175.3 178 56.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 7.1e-42 174.9 178 57.3
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 7.1e-42 174.9 178 57.3
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 7.1e-42 174.9 178 57.3
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.1e-42 174.9 178 56.2
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.1e-42 174.9 178 56.2
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 9.2e-42 174.5 178 56.7
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 9.2e-42 174.5 178 56.7
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 9.2e-42 174.5 178 56.2
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 9.2e-42 174.5 178 56.2
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 9.2e-42 174.5 178 56.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-41 174.1 178 55.6
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.2e-41 174.1 178 56.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.2e-41 174.1 178 56.2
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.6e-41 173.7 178 56.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.6e-41 173.7 178 56.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-41 173.7 175 58.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-41 173.7 175 58.3
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.1e-41 173.3 178 55.6
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.1e-41 173.3 178 56.7
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-41 172.9 178 56.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.7e-41 172.9 178 56.2
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.7e-41 172.9 178 56.2
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.5e-41 172.6 178 56.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.6e-41 172.2 178 55.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 4.6e-41 172.2 178 56.2
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.6e-41 172.2 177 57.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 6.0e-41 171.8 178 56.2
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 7.8e-41 171.4 178 56.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.3e-40 170.6 178 55.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-40 170.6 178 55.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.3e-40 170.6 178 55.6
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.7e-40 170.2 178 55.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.3e-40 169.9 178 55.1
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-40 169.9 178 55.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-40 169.9 178 55.6
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 3.0e-40 169.5 226 49.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.0e-40 169.5 176 55.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 3.0e-40 169.5 178 55.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.9e-40 169.1 179 55.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.9e-40 169.1 178 56.2
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.9e-40 169.1 178 55.1
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.9e-40 169.1 178 53.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.9e-40 169.1 178 55.1
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.1e-40 168.7 177 54.8
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.6e-40 168.3 178 54.5
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 8.6e-40 167.9 178 54.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 8.6e-40 167.9 178 53.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 8.6e-40 167.9 177 55.9
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.5e-39 167.2 182 53.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-39 166.8 177 55.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.5e-39 166.4 178 55.6
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.5e-39 166.4 178 54.5
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.3e-39 166.0 183 51.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.3e-39 166.0 178 55.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 3.3e-39 166.0 178 55.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.3e-39 165.6 183 52.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 5.6e-39 165.2 179 54.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 7.3e-39 164.9 178 55.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 7.3e-39 164.9 183 51.4
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 7.3e-39 164.9 183 50.8
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 9.6e-39 164.5 184 53.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 9.6e-39 164.5 183 50.8
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-38 164.1 175 54.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-38 163.7 177 55.4
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.1e-38 163.3 178 55.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.6e-38 162.5 178 53.4
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 3.6e-38 162.5 178 53.4
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.2e-38 161.8 182 50.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 6.2e-38 161.8 179 53.6
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 8.1e-38 161.4 178 51.7
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-37 161.0 178 51.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.4e-37 160.6 179 53.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.8e-37 160.2 177 54.8
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.4e-37 159.8 178 54.5
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 2.4e-37 159.8 177 52.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.0e-37 159.1 178 51.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.4e-36 156.0 178 51.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.3e-35 154.1 178 50.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.3e-35 154.1 178 51.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.4e-34 149.8 182 46.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.2e-34 149.1 129 63.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 9.3e-34 147.9 175 50.9
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 2.7e-33 146.4 176 49.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.7e-32 143.7 161 52.8
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.3e-32 143.3 167 50.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.5e-31 140.6 151 55.0
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.6e-30 136.0 128 62.5
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.4e-29 134.0 161 50.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 9.0e-29 131.3 162 48.1
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 4.5e-28 129.0 168 46.4
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.3e-27 127.5 169 46.2
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-26 124.0 67 91.0
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.4e-26 124.0 181 43.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 9.3e-26 121.3 89 70.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-24 117.5 150 48.7
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.3e-23 112.5 177 40.1
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.6e-23 112.1 170 45.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.6e-22 109.4 177 39.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.6e-22 109.4 167 40.1
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 8.1e-22 108.2 142 45.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.3e-21 105.5 178 40.4
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.8e-20 102.1 140 46.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-19 100.1 178 39.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-19 100.1 178 39.3
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.5e-15 87.4 174 34.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 4.0e-13 79.3 195 33.3
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-10 70.5 74 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 3.9e-08 62.8 78 44.9
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 4.3e-07 59.3 94 39.4


User provided reference genes

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