Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.8e-299 1031.9 571 100.0
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.7e-143 512.7 559 52.4
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 2.1e-130 470.3 542 52.6
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.9e-130 468.4 544 48.0
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.4e-129 467.6 540 52.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.0e-129 466.5 542 52.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.5e-128 463.4 559 49.9
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 6.9e-126 455.3 556 51.1
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 5.9e-125 452.2 549 50.6
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.0e-124 451.4 556 50.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.0e-124 451.4 549 50.3
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.3e-124 451.1 554 49.3
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.7e-124 450.7 552 50.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 5.5e-123 445.7 545 47.3
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 9.4e-123 444.9 542 47.4
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.6e-122 443.0 554 48.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.8e-121 440.7 535 52.0
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.3e-121 440.3 554 48.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.7e-120 434.9 544 47.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.2e-119 433.7 564 49.1
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 6.3e-119 432.2 543 45.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 7.0e-118 428.7 547 47.9
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.5e-117 426.4 570 44.9
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.5e-117 426.4 601 43.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.0e-116 424.9 557 49.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 1.0e-116 424.9 540 44.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.9e-116 423.3 551 48.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 8.5e-116 421.8 558 47.3
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.5e-115 420.2 555 44.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.2e-115 419.9 544 50.6
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.7e-114 416.0 548 49.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.7e-114 416.0 548 49.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 4.7e-114 416.0 573 48.3
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.0e-113 414.8 549 44.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.4e-113 414.5 541 50.8
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-113 414.1 552 48.0
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-113 413.7 544 46.0
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-113 413.7 550 49.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 8.8e-113 411.8 547 46.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.6e-112 410.2 559 42.8
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 4.4e-112 409.5 559 47.6
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 7.5e-112 408.7 552 46.6
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 7.5e-112 408.7 560 45.7
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 9.7e-112 408.3 544 45.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 9.7e-112 408.3 554 45.5
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 2.8e-111 406.8 542 47.4
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.8e-111 406.8 550 42.7
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.1e-110 404.8 541 49.9
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.4e-110 404.4 549 45.9
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.6e-109 401.0 543 44.8
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.6e-109 401.0 564 42.7
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.0e-109 400.6 561 48.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.7e-109 400.2 543 44.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.0e-108 398.3 548 42.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.7e-108 397.5 559 41.7
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.9e-108 396.7 540 43.5
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 6.5e-108 395.6 560 41.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 6.5e-108 395.6 553 43.0
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.5e-107 394.4 558 42.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-107 394.4 539 49.2
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.9e-107 394.0 560 41.2
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.1e-106 390.6 557 42.9
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.4e-105 387.9 557 42.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.7e-104 382.5 561 41.7
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.7e-104 382.5 553 40.3
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.7e-104 382.5 550 41.5
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 7.5e-104 382.1 551 40.3
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.1e-102 376.3 463 46.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.0e-101 374.0 582 40.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.8e-100 369.8 554 47.1
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 5.0e-100 369.4 507 44.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.5e-99 365.9 552 42.4
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 5.5e-99 365.9 551 44.6
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.6e-98 364.4 555 40.9
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.6e-98 364.4 547 44.2
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.1e-98 364.0 500 44.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.0e-97 361.7 539 39.9
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.0e-97 361.7 591 40.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.4e-97 361.3 569 40.9
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.0e-97 359.8 538 44.6
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 5.2e-97 359.4 571 45.2
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 4.4e-96 356.3 568 44.7
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 4.4e-96 356.3 560 43.8
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 9.8e-96 355.1 571 44.7
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 8.3e-95 352.1 560 41.4
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.4e-94 350.5 558 40.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 9.2e-94 348.6 589 39.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.6e-93 347.8 582 38.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 2.7e-93 347.1 564 42.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 4.5e-93 346.3 572 44.1
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 8.6e-92 342.0 573 41.7
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 2.5e-91 340.5 554 43.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.1e-90 337.4 555 40.7
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-89 334.7 559 42.8
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.2e-86 323.6 506 47.0
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.0e-85 320.9 559 37.6
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.3e-84 318.2 536 43.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 5.6e-83 312.8 564 36.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 7.3e-83 312.4 559 38.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.1e-82 310.8 298 52.7
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.8e-81 307.8 312 49.4
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.2e-80 305.1 591 40.8
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.7e-79 301.2 571 37.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 6.4e-79 299.3 543 36.1
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.5e-77 293.5 585 34.4
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.7e-76 291.2 549 41.0
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 4.3e-75 286.6 677 34.0
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.5e-75 285.4 638 32.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.2e-74 285.0 483 38.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.2e-73 279.6 580 34.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 8.9e-73 278.9 503 35.0
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.3e-71 275.0 554 35.9
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 3.2e-70 270.4 526 35.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 9.2e-70 268.9 269 51.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.8e-65 254.6 604 33.8
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.0e-64 251.1 540 33.0
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.0e-60 237.3 558 31.4
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.2e-55 221.1 438 35.6
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.1e-54 218.8 230 47.8
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.6e-53 214.9 640 28.0
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 6.6e-52 209.5 262 44.3
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.4e-49 201.8 683 27.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.4e-49 201.8 500 35.0
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.4e-49 201.1 560 28.0
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.3e-43 180.6 273 35.9
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.2e-40 172.2 174 49.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.4e-38 164.5 441 34.0
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.5e-35 154.5 567 27.5
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.5e-32 145.2 289 31.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.1e-30 139.0 262 33.6
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 3.2e-30 137.5 134 58.2
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 5.5e-30 136.7 144 55.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.2e-29 135.6 519 23.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.5e-29 134.0 141 49.6
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.2e-23 114.8 91 59.3
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 4.6e-21 107.1 238 31.1
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 8.2e-18 96.3 145 35.2
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 3.8e-15 87.4 140 44.3
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.1e-14 85.9 82 43.9
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.1e-14 85.9 82 43.9
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 8.5e-07 59.7 73 45.2


User provided reference genes

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