Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.4e-164 582.0 284 100.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 8.9e-98 360.9 271 66.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.7e-96 356.7 284 63.4
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.8e-95 353.2 275 64.4
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.0e-94 349.7 284 60.6
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.3e-93 347.1 271 64.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 6.6e-93 344.7 271 63.8
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 4.3e-92 342.0 272 63.6
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 7.3e-92 341.3 271 61.6
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.2e-91 340.5 271 62.0
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.2e-91 340.5 271 62.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.2e-91 340.5 271 63.1
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.1e-91 339.7 269 62.1
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.8e-91 339.3 271 61.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 2.8e-91 339.3 269 61.0
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.6e-91 339.0 271 61.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.7e-91 338.6 270 60.0
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 4.7e-91 338.6 272 63.6
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 6.2e-91 338.2 271 61.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 6.2e-91 338.2 271 61.3
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 6.2e-91 338.2 271 61.3
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 6.2e-91 338.2 285 59.6
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.2e-91 338.2 273 63.0
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 8.0e-91 337.8 269 61.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-90 337.4 272 61.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.0e-90 337.4 269 60.6
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.8e-90 336.7 271 61.3
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.3e-90 336.3 269 63.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 4.0e-90 335.5 269 61.7
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 6.8e-90 334.7 271 60.5
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 6.8e-90 334.7 271 60.5
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.8e-90 334.7 271 60.5
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 6.8e-90 334.7 271 60.5
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 6.8e-90 334.7 271 60.5
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 8.9e-90 334.3 271 60.1
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.5e-89 333.6 271 60.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-89 333.6 271 62.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.4e-89 332.4 271 60.9
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.4e-89 332.0 279 59.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.8e-89 331.6 271 61.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.8e-89 331.6 269 60.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.8e-89 331.6 269 60.6
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 9.8e-89 330.9 271 60.9
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 9.8e-89 330.9 284 57.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.3e-88 330.5 284 57.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.2e-88 329.7 271 59.8
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.2e-88 329.7 269 61.0
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.7e-88 328.9 270 61.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.7e-88 328.9 274 59.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.7e-88 328.9 271 60.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.4e-87 327.0 271 60.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.2e-87 325.9 281 58.0
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 5.4e-87 325.1 279 57.7
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.4e-87 325.1 274 59.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.0e-86 323.2 275 60.0
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.7e-86 322.8 272 59.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 3.5e-86 322.4 271 59.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 3.5e-86 322.4 269 60.6
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 6.0e-86 321.6 282 57.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.0e-86 321.6 271 60.1
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.0e-85 320.9 269 59.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 5.0e-85 318.5 282 59.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 6.6e-85 318.2 270 58.1
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.1e-84 317.4 270 57.8
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.1e-84 317.4 262 58.8
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-84 317.0 281 56.6
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.3e-84 315.8 272 57.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.6e-84 315.1 281 56.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 4.7e-83 312.0 265 58.9
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 8.1e-83 311.2 270 57.8
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.1e-82 310.8 269 57.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.4e-82 310.5 267 59.6
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.4e-82 310.5 270 58.1
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.8e-82 308.1 268 57.5
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.5e-81 307.0 280 55.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.3e-80 303.9 271 57.2
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.7e-80 303.5 280 54.6
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.2e-80 303.1 284 53.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 2.9e-80 302.8 271 57.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-80 302.8 271 57.2
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-80 302.4 271 56.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-80 302.4 271 56.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.4e-79 299.7 278 55.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 4.1e-79 298.9 280 55.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.1e-79 298.9 278 55.4
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.4e-79 298.5 271 56.8
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 7.1e-79 298.1 281 54.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 6.0e-78 295.0 271 56.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 6.0e-78 295.0 271 55.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.3e-77 293.9 269 55.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.3e-77 293.1 272 53.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.9e-77 292.4 271 56.5
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 6.6e-77 291.6 279 53.4
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 8.6e-77 291.2 280 55.7
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 5.6e-76 288.5 261 56.7
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 9.5e-76 287.7 252 55.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-75 287.3 271 56.8
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-75 287.3 371 42.9
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.2e-75 287.3 273 52.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 6.2e-75 285.0 278 54.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 5.8e-73 278.5 271 51.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.7e-72 275.8 276 53.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-72 275.8 276 53.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.7e-72 275.8 289 51.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.7e-72 275.8 289 51.2
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.9e-72 275.4 276 53.3
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.9e-71 273.5 276 52.5
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.7e-70 269.6 271 52.8
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.5e-70 269.2 270 53.0
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.1e-69 265.4 271 48.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.6e-68 261.9 277 49.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.1e-67 260.0 289 48.8
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.6e-67 259.2 269 51.7
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.1e-66 257.7 342 43.3
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-66 256.5 275 48.4
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 2.9e-64 249.6 195 61.5
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.9e-64 249.6 271 47.2
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.0e-62 241.9 280 47.5
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.7e-61 238.0 271 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.1e-60 237.7 270 48.1
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.3e-56 224.2 195 56.4
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.1e-54 216.9 178 60.7
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.9e-50 201.8 184 58.7
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.0e-45 186.4 282 37.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-41 172.9 148 55.4
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.9e-36 157.1 139 59.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 3.3e-36 156.4 138 58.0
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.3e-29 133.7 273 34.4
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.0e-24 118.2 103 61.2
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 8.5e-24 115.2 119 48.7
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 8.5e-24 115.2 84 61.9
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.2e-23 113.2 91 64.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.6e-22 110.9 76 68.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.8e-21 105.1 103 51.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 3.7e-19 99.8 88 53.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.2e-17 94.7 89 57.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.8e-16 89.7 80 58.8
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.2e-15 85.5 90 46.7
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.5e-08 62.0 54 53.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.9e-07 60.8 296 21.3
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 7.2e-07 58.9 77 37.7
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.2e-06 58.2 188 27.7
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.7e-06 57.0 32 75.0


User provided reference genes

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