Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 6.5e-168 594.0 299 100.0
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.1e-113 412.9 284 71.1
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.5e-111 406.0 284 70.1
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.3e-110 403.7 284 69.4
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 3.8e-107 392.1 286 66.8
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.9e-104 382.1 286 67.1
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.1e-104 381.7 288 63.5
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.5e-103 380.2 286 64.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.3e-103 379.0 286 67.1
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 7.4e-103 377.9 287 62.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 9.6e-103 377.5 286 64.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.6e-102 376.7 288 65.3
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 4.8e-102 375.2 287 63.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.8e-102 375.2 288 63.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.8e-102 375.2 288 63.9
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 8.2e-102 374.4 286 65.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.1e-101 372.5 284 62.7
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 4.0e-101 372.1 284 63.0
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 4.0e-101 372.1 287 64.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 5.3e-101 371.7 288 63.2
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.9e-101 371.3 284 62.7
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.2e-100 370.5 284 63.0
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 2.0e-100 369.8 284 62.3
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.6e-100 369.4 288 64.6
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.0e-99 367.5 287 62.7
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.7e-99 366.7 286 61.9
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 4.9e-99 365.2 291 61.5
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.4e-99 364.4 288 63.2
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.1e-98 364.0 286 62.6
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.4e-98 363.6 288 60.8
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.5e-98 362.8 288 64.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.5e-98 362.8 286 62.2
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 2.5e-98 362.8 289 63.3
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.2e-98 362.1 287 62.4
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 4.2e-98 362.1 288 60.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 9.3e-98 360.9 284 61.6
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.2e-97 360.5 288 63.9
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.6e-97 360.1 283 61.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.7e-97 359.4 286 61.5
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 6.0e-97 358.2 286 62.2
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 6.0e-97 358.2 286 62.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 6.0e-97 358.2 286 62.2
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 7.9e-97 357.8 288 60.1
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 7.9e-97 357.8 287 63.1
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.3e-96 357.1 284 60.6
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.1e-96 355.1 287 61.0
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.1e-96 355.1 287 61.0
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.7e-96 354.8 287 60.6
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 6.7e-96 354.8 284 59.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.1e-95 354.0 289 62.3
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.1e-95 354.0 287 60.6
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.5e-95 353.6 290 62.1
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.9e-95 353.2 287 60.6
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.5e-95 352.8 287 60.6
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 3.3e-95 352.4 285 60.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 5.7e-95 351.7 287 58.9
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 7.4e-95 351.3 286 58.4
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 9.7e-95 350.9 286 60.1
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 4.8e-94 348.6 291 61.5
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.8e-94 348.6 286 59.8
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.4e-93 347.1 287 59.2
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.1e-93 345.9 283 58.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 4.1e-93 345.5 286 59.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 5.3e-93 345.1 286 59.1
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 9.0e-93 344.4 286 60.5
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-92 344.0 287 58.5
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.0e-92 343.2 287 58.5
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.0e-92 343.2 287 58.2
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.0e-92 343.2 287 58.9
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 2.0e-92 343.2 286 59.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.6e-92 342.8 290 57.9
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 5.9e-92 341.7 290 60.0
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 5.9e-92 341.7 290 60.0
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.0e-91 340.9 290 60.3
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.7e-91 340.1 290 60.3
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.9e-91 339.3 290 60.0
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 5.0e-91 338.6 290 59.3
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-91 338.6 290 60.0
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-91 338.6 288 60.1
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 5.0e-91 338.6 288 60.1
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 6.5e-91 338.2 288 59.0
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 6.5e-91 338.2 290 58.6
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 8.5e-91 337.8 287 60.3
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 8.5e-91 337.8 290 59.3
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.4e-90 337.0 290 59.3
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.5e-90 336.3 290 59.7
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 2.5e-90 336.3 288 58.0
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 3.2e-90 335.9 290 59.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 3.2e-90 335.9 285 59.6
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.2e-90 335.9 290 60.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 9.4e-90 334.3 288 58.7
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 2.7e-89 332.8 287 57.5
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.4e-88 330.5 287 58.9
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 3.0e-88 329.3 287 56.8
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-88 329.3 288 55.9
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-88 329.3 288 55.9
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 3.9e-88 328.9 283 58.0
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.1e-87 327.4 287 56.4
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.3e-87 325.9 302 54.6
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 5.7e-87 325.1 287 56.1
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 7.4e-87 324.7 287 55.7
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.3e-86 323.9 319 54.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.3e-86 323.9 285 57.9
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 3.7e-86 322.4 231 64.5
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.8e-85 320.1 287 56.8
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 4.1e-85 318.9 296 53.4
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.6e-84 316.2 286 54.2
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.0e-80 304.3 290 56.9
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 4.4e-79 298.9 252 59.5
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.5e-76 288.9 287 53.7
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.1e-69 267.7 296 46.3
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.0e-68 263.5 290 47.2
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.7e-65 253.1 291 47.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.7e-59 233.8 295 41.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 9.8e-55 218.0 145 70.3
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.2e-52 211.1 292 39.7
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 1.7e-51 207.2 200 50.5
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.3e-51 206.8 224 46.9
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 6.1e-49 198.7 163 60.7
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-43 181.0 165 57.6
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 5.0e-43 179.1 165 57.0
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 8.9e-40 168.3 294 32.3
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 5.4e-37 159.1 131 61.1
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 3.5e-36 156.4 133 63.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.8e-32 144.1 133 54.9
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 2.6e-31 140.2 263 31.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 5.8e-31 139.0 132 57.6
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-30 136.7 103 67.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.4e-29 134.4 96 68.8
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 4.1e-29 132.9 96 68.8
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.4e-29 132.5 184 41.3
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 5.4e-29 132.5 96 68.8
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.3e-27 127.9 100 59.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.1e-26 124.8 109 56.9
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.6e-25 120.9 98 65.3
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 8.1e-25 118.6 171 39.8
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 2.3e-24 117.1 308 28.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.4e-23 113.2 158 39.9
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 5.8e-23 112.5 101 57.4
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 5.8e-23 112.5 101 57.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.9e-22 109.4 99 56.6
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 3.2e-21 106.7 100 56.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 7.1e-21 105.5 113 46.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.6e-20 102.8 117 45.3
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.7e-19 100.9 135 40.7
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.0e-19 100.1 175 38.3
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 6.6e-19 99.0 113 46.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 4.4e-15 86.3 97 45.4
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 3.3e-10 70.1 42 81.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.8e-09 67.0 119 37.0
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-07 61.6 37 75.7
Gohir.A12G011100 Gossypium hirsutum HOM05D001610 ORTHO05D001585 1.5e-07 61.2 197 25.4
Gohir.D12G011500 Gossypium hirsutum HOM05D001610 ORTHO05D001585 2.6e-07 60.5 238 24.8
Gorai.008G011600 Gossypium raimondii HOM05D001610 ORTHO05D001585 2.6e-07 60.5 238 24.8
AT5G08560 Arabidopsis thaliana HOM05D001610 ORTHO05D001585 1.7e-06 57.8 218 22.9
Thhalv10013060m.g Eutrema salsugineum HOM05D001610 ORTHO05D001585 4.9e-06 56.2 197 23.9
AL6G19280 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 6.4e-06 55.8 197 23.9
CARHR204410 Cardamine hirsuta HOM05D001610 ORTHO05D001585 6.4e-06 55.8 217 22.6
Sp6g34330 Schrenkiella parvula HOM05D001610 ORTHO05D001585 8.4e-06 55.5 197 22.8


User provided reference genes

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