Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02705 Sapria himalayana HOM05D003301 ORTHO05D003665 4.3e-43 177.6 88 100.0
Manes.03G025500 Manihot esculenta HOM05D003301 ORTHO05D003665 1.5e-11 72.8 38 81.6
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 1.5e-11 72.8 44 72.7
MELO3C024685.2 Cucumis melo HOM05D003301 ORTHO05D003665 2.0e-11 72.4 38 81.6
CsaV3_1G045710 Cucumis sativus L. HOM05D003301 ORTHO05D003665 2.0e-11 72.4 38 81.6
Potri.006G164000 Populus trichocarpa HOM05D003301 ORTHO05D003665 2.5e-11 72.0 38 81.6
Ciclev10007544m.g Citrus clementina HOM05D003301 ORTHO05D003665 3.3e-11 71.6 38 84.2
AL3G48120 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 4.3e-11 71.2 38 78.9
AT2G20000 Arabidopsis thaliana HOM05D003301 ORTHO05D003665 4.3e-11 71.2 38 78.9
Cpa.g.sc40.52 Carica papaya HOM05D003301 ORTHO05D003665 4.3e-11 71.2 38 81.6
CiPaw.02G084900 Carya illinoinensis HOM05D003301 ORTHO05D003665 4.3e-11 71.2 38 81.6
Cc02_g31350 Coffea canephora HOM05D003301 ORTHO05D003665 4.3e-11 71.2 37 83.8
COL.COLO4_34768 Corchorus olitorius HOM05D003301 ORTHO05D003665 5.7e-11 70.9 38 78.9
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 5.7e-11 70.9 38 78.9
Duzib168G1984 Durio zibethinus HOM05D003301 ORTHO05D003665 5.7e-11 70.9 38 78.9
Lj1C1172G8 Lonicera japonica HOM05D003301 ORTHO05D003665 5.7e-11 70.9 42 76.2
Oeu041533.1 Olea europaea HOM05D003301 ORTHO05D003665 5.7e-11 70.9 38 81.6
TWI32G1357 Tripterygium wilfordii HOM05D003301 ORTHO05D003665 5.7e-11 70.9 38 78.9
ClCG06G009040 Citrullus lanatus HOM05D003301 ORTHO05D003665 7.4e-11 70.5 38 78.9
Thecc.09G102400 Theobroma cacao HOM05D003301 ORTHO05D003665 7.4e-11 70.5 38 78.9
Aa31LG8G16930 Aethionema arabicum HOM05D003301 ORTHO05D003665 9.7e-11 70.1 38 78.9
Cfa003198 Carpinus fangiana HOM05D003301 ORTHO05D003665 9.7e-11 70.1 38 76.3
Haze_25809 Corylus avellana HOM05D003301 ORTHO05D003665 9.7e-11 70.1 38 78.9
DCAR_007883 Daucus carota HOM05D003301 ORTHO05D003665 1.3e-10 69.7 37 81.1
Potri.018G086300 Populus trichocarpa HOM05D003301 ORTHO05D003665 1.3e-10 69.7 38 78.9
CARHR110420 Cardamine hirsuta HOM05D003301 ORTHO05D003665 1.7e-10 69.3 38 76.3
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 1.7e-10 69.3 38 76.3
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.7e-10 69.3 38 78.9
Sp3g33320 Schrenkiella parvula HOM05D003301 ORTHO05D003665 1.7e-10 69.3 38 76.3
Thhalv10001914m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 2.2e-10 68.9 38 76.3
CSS0004573 Camellia sinensis var. sinensis HOM05D003301 ORTHO05D003665 2.8e-10 68.6 38 78.9
Cfa011406 Carpinus fangiana HOM05D003301 ORTHO05D003665 2.8e-10 68.6 38 78.9
Gorai.013G229900 Gossypium raimondii HOM05D003301 ORTHO05D003665 2.8e-10 68.6 38 73.7
ECA236G0920 Erigeron canadensis HOM05D003301 ORTHO05D003665 3.7e-10 68.2 38 73.7
Oeu053267.2 Olea europaea HOM05D003301 ORTHO05D003665 3.7e-10 68.2 38 76.3
DCAR_003903 Daucus carota HOM05D003301 ORTHO05D003665 4.8e-10 67.8 37 78.4
Nitab4.5_0003462g0010 Nicotiana tabacum HOM05D003301 ORTHO05D003665 4.8e-10 67.8 38 76.3
Nitab4.5_0005427g0040 Nicotiana tabacum HOM05D003301 ORTHO05D003665 4.8e-10 67.8 38 76.3
SalBow1G8065 Salvia bowleyana HOM05D003301 ORTHO05D003665 4.8e-10 67.8 35 85.7
THA.LOC104804009 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 4.8e-10 67.8 38 78.9
vmacro05243 Vaccinium macrocarpon HOM05D003301 ORTHO05D003665 4.8e-10 67.8 38 76.3
Atru.chr7.1441_Atru.chr7.1442 Acer truncatum HOM05D003301 ORTHO05D003665 6.3e-10 67.4 38 76.3
Carub.0003s3424 Capsella rubella HOM05D003301 ORTHO05D003665 6.3e-10 67.4 38 73.7
Dinv17765 Davidia involucrata HOM05D003301 ORTHO05D003665 6.3e-10 67.4 38 76.3
TAR626G1939 Trochodendron aralioides HOM05D003301 ORTHO05D003665 8.2e-10 67.0 38 76.3
BcaC06g36672 Brassica carinata HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
A07p00650 Brassica napus HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
C07p01500 Brassica napus HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
BolC7t40564H Brassica oleracea HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
BraA07t27863Z Brassica rapa HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
Migut.I00703 Erythranthe guttata HOM05D003301 ORTHO05D003665 1.1e-09 66.6 35 82.9
Eucgr.D00685 Eucalyptus grandis HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
Prupe.7G222000 Prunus persica HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 73.7
Sc25g0000540 Simmondsia chinensis HOM05D003301 ORTHO05D003665 1.1e-09 66.6 36 80.6
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 1.1e-09 66.6 38 81.6
Rhsim10G0110900 Rhododendron simsii HOM05D003301 ORTHO05D003665 1.4e-09 66.2 38 73.7
ATR0605G018 Amborella trichopoda HOM05D003301 ORTHO05D003665 1.8e-09 65.9 38 68.4
MD02G1061000 Malus domestica HOM05D003301 ORTHO05D003665 2.4e-09 65.5 38 73.7
MD15G1194500 Malus domestica HOM05D003301 ORTHO05D003665 2.4e-09 65.5 38 73.7
Duzib187G0026 Durio zibethinus HOM05D003301 ORTHO05D003665 3.1e-09 65.1 38 73.7
Lsat_1_v5_gn_7_28060 Lactuca sativa HOM05D003301 ORTHO05D003665 3.1e-09 65.1 38 71.1
Aqoxy7G03886 Aquilegia oxysepala HOM05D003301 ORTHO05D003665 4.1e-09 64.7 37 73.0
EL10Ac5g11341 Beta vulgaris HOM05D003301 ORTHO05D003665 4.1e-09 64.7 38 76.3
CANSAT56G0288 Cannabis sativa HOM05D003301 ORTHO05D003665 4.1e-09 64.7 38 73.7
Nn6g35303 Nelumbo nucifera HOM05D003301 ORTHO05D003665 4.1e-09 64.7 37 73.0
Peaxi162Scf01003g00120 Petunia axillaris HOM05D003301 ORTHO05D003665 4.1e-09 64.7 38 71.1
QL09p023443 Quercus lobata HOM05D003301 ORTHO05D003665 4.1e-09 64.7 39 69.2
Gorai.009G027300 Gossypium raimondii HOM05D003301 ORTHO05D003665 5.3e-09 64.3 38 71.1
Sopen03g014540 Solanum pennellii HOM05D003301 ORTHO05D003665 5.3e-09 64.3 38 73.7
MSTRG.22791 Avicennia marina HOM05D003301 ORTHO05D003665 6.9e-09 63.9 35 77.1
Dinv11538 Davidia involucrata HOM05D003301 ORTHO05D003665 6.9e-09 63.9 38 71.1
Solyc03g061590.4 Solanum lycopersicum HOM05D003301 ORTHO05D003665 6.9e-09 63.9 37 75.7
Actinidia05765 Actinidia chinensis HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 71.1
CAN.G165.27 Capsicum annuum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 68.4
CDE05G0381 Ceratophyllum demersum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 71.1
Gohir.A05G025700 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 71.1
Gohir.D05G027200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 71.1
Lj1g0006963 Lotus japonicus HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 68.4
Nn8g39106 Nelumbo nucifera HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 68.4
PSO210G4003 Papaver somniferum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 68.4
PSO210G4840 Papaver somniferum HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 68.4
SGA_v2.0_scaffold37G14722 Striga asiatica HOM05D003301 ORTHO05D003665 1.2e-08 63.2 38 76.3
Zm00001eb144740 Zea mays HOM05D003301 ORTHO05D003665 1.5e-08 62.8 38 71.1
CAN.G303.59 Capsicum annuum HOM05D003301 ORTHO05D003665 2.0e-08 62.4 38 68.4
Sed0012844 Sechium edule HOM05D003301 ORTHO05D003665 2.0e-08 62.4 38 68.4
unitig_62.g23581 Utricularia gibba HOM05D003301 ORTHO05D003665 2.0e-08 62.4 39 71.8
AUR62034804 Chenopodium quinoa HOM05D003301 ORTHO05D003665 2.6e-08 62.0 37 73.0
HanXRQChr04g0114411 Helianthus annuus HOM05D003301 ORTHO05D003665 3.4e-08 61.6 38 65.8
SGA_v2.0_scaffold5G02773 Striga asiatica HOM05D003301 ORTHO05D003665 3.4e-08 61.6 35 77.1
AUR62029540 Chenopodium quinoa HOM05D003301 ORTHO05D003665 4.5e-08 61.2 35 77.1
Glyma.18G279500 Glycine max HOM05D003301 ORTHO05D003665 4.5e-08 61.2 38 65.8
RcHm_v2.0_Chr2g0091551 Rosa chinensis HOM05D003301 ORTHO05D003665 4.5e-08 61.2 38 68.4
RcHm_v2.0_Chr2g0091631 Rosa chinensis HOM05D003301 ORTHO05D003665 4.5e-08 61.2 38 68.4
FvH4_1g05910 Fragaria vesca HOM05D003301 ORTHO05D003665 5.9e-08 60.8 38 65.8
arahy.Tifrunner.gnm1.ann1.JNCQ1V Arachis hypogaea HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 65.8
arahy.Tifrunner.gnm1.ann1.M26Z43 Arachis hypogaea HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 65.8
EL10Ac8g18344 Beta vulgaris HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 71.1
FAN26G0830 Fragaria x ananassa HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 65.8
FAN26G2473 Fragaria x ananassa HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 65.8
Lj2g0018429 Lotus japonicus HOM05D003301 ORTHO05D003665 7.7e-08 60.5 42 59.5
VMungo1383G1642 Vigna mungo HOM05D003301 ORTHO05D003665 7.7e-08 60.5 38 65.8
HanXRQChr15g0482141 Helianthus annuus HOM05D003301 ORTHO05D003665 1.0e-07 60.1 38 65.8
Sed0014147 Sechium edule HOM05D003301 ORTHO05D003665 1.0e-07 60.1 38 68.4
FAN23G1082 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.3e-07 59.7 36 69.4
FAN28G0298 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.3e-07 59.7 38 65.8
FAN19G3015 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.7e-07 59.3 38 63.2
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 1.7e-07 59.3 38 65.8
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 1.7e-07 59.3 38 68.4
Ah.02g114730 Amaranthus hybridus HOM05D003301 ORTHO05D003665 2.2e-07 58.9 37 70.3
Peaxi162Scf00090g02113 Petunia axillaris HOM05D003301 ORTHO05D003665 2.2e-07 58.9 38 63.2
SEGI_02735 Sequoiadendron giganteum HOM05D003301 ORTHO05D003665 2.9e-07 58.5 35 68.6
THA.LOC104810537 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 2.9e-07 58.5 38 65.8
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 5.0e-07 57.8 37 67.6
Lalb_Chr06g0174741 Lupinus albus HOM05D003301 ORTHO05D003665 5.0e-07 57.8 38 65.8
Thecc.06G098300 Theobroma cacao HOM05D003301 ORTHO05D003665 5.0e-07 57.8 38 65.8
HPP92_022014 Vanilla planifolia HOM05D003301 ORTHO05D003665 5.0e-07 57.8 38 63.2
Glyma.19G042200 Glycine max HOM05D003301 ORTHO05D003665 8.5e-07 57.0 38 63.2
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 8.5e-07 57.0 38 63.2
Phvul.008G021500 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 8.5e-07 57.0 38 63.2
Ca_06722_v3 Cicer arietinum L. HOM05D003301 ORTHO05D003665 1.1e-06 56.6 38 63.2
Pp3c7_3760 Physcomitrium patens HOM05D003301 ORTHO05D003665 1.1e-06 56.6 38 63.2
BcaB06g25725 Brassica carinata HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
BcaC05g28893 Brassica carinata HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
A05p33220 Brassica napus HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
C05p50180 Brassica napus HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
BolC5t33768H Brassica oleracea HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
BraA05t22145Z Brassica rapa HOM05D003301 ORTHO05D003665 1.9e-06 55.8 38 60.5
Glyma.13G049400 Glycine max HOM05D003301 ORTHO05D003665 2.5e-06 55.5 38 60.5
Psat1g063480 Pisum sativum HOM05D003301 ORTHO05D003665 2.5e-06 55.5 38 60.5
PGR142G1632 Punica granatum HOM05D003301 ORTHO05D003665 3.2e-06 55.1 44 56.8
AL3G29070 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 4.2e-06 54.7 38 57.9
Psat3g146520 Pisum sativum HOM05D003301 ORTHO05D003665 4.2e-06 54.7 38 63.2
TPR.G9679 Trifolium pratense HOM05D003301 ORTHO05D003665 5.5e-06 54.3 38 57.9
Lalb_Chr02g0158441 Lupinus albus HOM05D003301 ORTHO05D003665 7.2e-06 53.9 38 60.5
Thhalv10021943m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 9.4e-06 53.5 38 60.5


User provided reference genes

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