Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 4.6e-43 177.6 95 100.0
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 3.7e-24 114.8 83 72.3
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 2.4e-23 112.1 83 73.5
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 3.1e-23 111.7 82 74.4
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 4.1e-23 111.3 92 64.1
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 5.3e-23 110.9 83 71.1
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 9.1e-23 110.2 92 64.1
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 9.1e-23 110.2 82 72.0
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 2.0e-22 109.0 83 69.9
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 3.5e-22 108.2 83 68.7
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 3.5e-22 108.2 83 69.9
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 4.5e-22 107.8 83 68.7
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 5.9e-22 107.5 83 68.7
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 7.7e-22 107.1 82 69.5
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 7.7e-22 107.1 81 70.4
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 7.7e-22 107.1 81 70.4
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 1.0e-21 106.7 83 69.9
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.0e-21 106.7 83 68.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.0e-21 106.7 83 68.7
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.3e-21 106.3 83 67.5
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.3e-21 106.3 83 69.9
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.7e-21 105.9 82 68.3
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 2.2e-21 105.5 83 68.7
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.2e-21 105.5 81 69.1
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.9e-21 105.1 81 69.1
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.9e-21 105.1 81 69.1
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 2.9e-21 105.1 81 70.4
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 2.9e-21 105.1 83 67.5
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 3.8e-21 104.8 82 68.3
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 5.0e-21 104.4 83 66.3
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 6.5e-21 104.0 87 64.4
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 8.5e-21 103.6 83 67.5
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 8.5e-21 103.6 83 63.9
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 8.5e-21 103.6 83 63.9
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 8.5e-21 103.6 83 63.9
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 8.5e-21 103.6 83 63.9
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 8.5e-21 103.6 83 66.3
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 1.1e-20 103.2 82 67.1
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 1.1e-20 103.2 83 65.1
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 1.9e-20 102.4 83 65.1
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 1.9e-20 102.4 85 65.9
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.5e-20 102.1 79 69.6
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 3.2e-20 101.7 81 69.1
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 5.5e-20 100.9 83 63.9
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 5.5e-20 100.9 83 63.9
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 9.4e-20 100.1 83 63.9
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 1.2e-19 99.8 82 61.0
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.2e-19 99.8 82 61.0
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.6e-19 99.4 82 64.6
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 2.1e-19 99.0 82 63.4
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 2.1e-19 99.0 82 59.8
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.1e-19 99.0 82 63.4
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.1e-19 99.0 82 63.4
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 2.7e-19 98.6 81 65.4
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 3.6e-19 98.2 87 57.5
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.6e-19 98.2 84 64.3
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 3.6e-19 98.2 84 64.3
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 3.6e-19 98.2 83 62.7
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 4.7e-19 97.8 82 59.8
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 4.7e-19 97.8 83 63.9
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 4.7e-19 97.8 82 63.4
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 8.0e-19 97.1 84 64.3
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 8.0e-19 97.1 84 64.3
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 8.0e-19 97.1 83 61.4
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 8.0e-19 97.1 83 63.9
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 8.0e-19 97.1 82 59.8
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.0e-18 96.7 81 63.0
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.0e-18 96.7 70 72.9
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.0e-18 96.7 82 59.8
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 1.4e-18 96.3 84 61.9
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 1.4e-18 96.3 82 62.2
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 1.4e-18 96.3 81 59.3
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 1.8e-18 95.9 83 62.7
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 1.8e-18 95.9 81 61.7
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.8e-18 95.9 82 58.5
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 2.3e-18 95.5 86 60.5
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 2.3e-18 95.5 81 63.0
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 2.3e-18 95.5 81 63.0
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 2.3e-18 95.5 81 63.0
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 2.3e-18 95.5 81 63.0
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 2.3e-18 95.5 81 63.0
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 3.0e-18 95.1 82 56.1
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 3.0e-18 95.1 81 60.5
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 3.0e-18 95.1 79 65.8
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 3.0e-18 95.1 81 63.0
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 4.0e-18 94.7 82 61.0
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 5.2e-18 94.4 81 61.7
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 6.8e-18 94.0 83 62.7
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 6.8e-18 94.0 83 62.7
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 8.8e-18 93.6 83 61.4
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 1.2e-17 93.2 83 61.4
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 1.5e-17 92.8 83 61.4
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 1.5e-17 92.8 80 58.8
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 2.0e-17 92.4 84 61.9
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 2.6e-17 92.0 88 56.8
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 4.4e-17 91.3 83 57.8
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.7e-16 89.4 84 56.0
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 3.7e-16 88.2 78 61.5
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 3.7e-16 88.2 81 56.8
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 3.7e-16 88.2 79 59.5
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 6.3e-16 87.4 83 54.2
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 6.3e-16 87.4 83 54.2
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 8.3e-16 87.0 84 53.6
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 1.8e-15 85.9 84 54.8
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 1.8e-15 85.9 78 61.5
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 2.4e-15 85.5 76 60.5
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 2.4e-15 85.5 86 52.3
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 2.4e-15 85.5 86 52.3
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 3.1e-15 85.1 79 58.2
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 1.6e-14 82.8 67 67.2
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 1.6e-14 82.8 67 67.2
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 1.6e-14 82.8 67 67.2
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 2.7e-14 82.0 78 57.7
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 3.5e-14 81.6 65 69.2
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 5.9e-14 80.9 67 65.7
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 7.7e-14 80.5 78 56.4
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 1.3e-13 79.7 83 50.6
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 2.3e-13 79.0 75 58.7
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 2.9e-13 78.6 81 51.9
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 5.0e-13 77.8 83 47.0
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 4.2e-12 74.7 82 53.7
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 1.0e-10 70.1 83 48.2
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 1.4e-10 69.7 81 48.1
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 5.2e-10 67.8 79 46.8
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 3.7e-08 61.6 60 58.3
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 4.9e-08 61.2 89 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 1.1e-07 60.1 85 40.0
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 7.0e-07 57.4 78 41.0
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 3.5e-06 55.1 83 42.2


User provided reference genes

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